Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS02150 and RPSI07_RS02155 are separated by 19 nucleotides RPSI07_RS02155 and RPSI07_RS02160 are separated by 56 nucleotides RPSI07_RS02160 and RPSI07_RS02165 are separated by 314 nucleotides RPSI07_RS02165 and RPSI07_RS02170 are separated by 105 nucleotides
RPSI07_RS02150: RPSI07_RS02150 - phenylacetate-CoA oxygenase/reductase subunit PaaK, at 637,022 to 638,113
_RS02150
RPSI07_RS02155: RPSI07_RS02155 - hypothetical protein, at 638,133 to 638,636
_RS02155
RPSI07_RS02160: RPSI07_RS02160 - DUF2322 domain-containing protein, at 638,693 to 639,025
_RS02160
RPSI07_RS02165: RPSI07_RS02165 - DUF2784 domain-containing protein, at 639,340 to 639,708
_RS02165
RPSI07_RS02170: RPSI07_RS02170 - TetR/AcrR family transcriptional regulator, at 639,814 to 640,425
_RS02170
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 637.940 kb on + strand, within RPSI07_RS02150 at 637.940 kb on + strand, within RPSI07_RS02150 at 637.941 kb on - strand, within RPSI07_RS02150 at 637.941 kb on - strand, within RPSI07_RS02150 at 637.941 kb on - strand, within RPSI07_RS02150 at 637.941 kb on - strand, within RPSI07_RS02150 at 637.941 kb on - strand, within RPSI07_RS02150 at 637.941 kb on - strand, within RPSI07_RS02150 at 637.941 kb on - strand, within RPSI07_RS02150 at 637.941 kb on - strand, within RPSI07_RS02150 at 638.100 kb on - strand at 638.111 kb on + strand at 638.112 kb on - strand at 638.112 kb on - strand at 638.144 kb on + strand at 638.248 kb on + strand, within RPSI07_RS02155 at 638.283 kb on + strand, within RPSI07_RS02155 at 638.340 kb on + strand, within RPSI07_RS02155 at 638.375 kb on - strand, within RPSI07_RS02155 at 638.375 kb on - strand, within RPSI07_RS02155 at 638.434 kb on + strand, within RPSI07_RS02155 at 638.503 kb on + strand, within RPSI07_RS02155 at 638.503 kb on + strand, within RPSI07_RS02155 at 638.503 kb on + strand, within RPSI07_RS02155 at 638.504 kb on - strand, within RPSI07_RS02155 at 638.504 kb on - strand, within RPSI07_RS02155 at 638.506 kb on + strand, within RPSI07_RS02155 at 638.507 kb on - strand, within RPSI07_RS02155 at 638.532 kb on + strand, within RPSI07_RS02155 at 638.624 kb on + strand at 638.624 kb on + strand at 638.650 kb on + strand at 638.650 kb on + strand at 638.712 kb on + strand at 638.712 kb on + strand at 638.712 kb on + strand at 638.712 kb on + strand at 638.713 kb on - strand at 638.713 kb on - strand at 638.713 kb on - strand at 638.840 kb on + strand, within RPSI07_RS02160 at 638.840 kb on + strand, within RPSI07_RS02160 at 638.840 kb on + strand, within RPSI07_RS02160 at 638.840 kb on + strand, within RPSI07_RS02160 at 638.840 kb on + strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.841 kb on - strand, within RPSI07_RS02160 at 638.846 kb on + strand, within RPSI07_RS02160 at 638.846 kb on + strand, within RPSI07_RS02160 at 638.847 kb on - strand, within RPSI07_RS02160 at 639.090 kb on + strand at 639.090 kb on + strand at 639.125 kb on - strand at 639.240 kb on + strand at 639.240 kb on + strand at 639.241 kb on - strand at 639.241 kb on - strand at 639.241 kb on - strand at 639.241 kb on - strand at 639.241 kb on - strand at 639.241 kb on - strand at 639.244 kb on + strand at 639.244 kb on + strand at 639.244 kb on + strand at 639.244 kb on + strand at 639.244 kb on + strand at 639.244 kb on + strand at 639.244 kb on + strand at 639.245 kb on - strand at 639.245 kb on - strand at 639.245 kb on - strand at 639.245 kb on - strand at 639.245 kb on - strand at 639.245 kb on - strand at 639.245 kb on - strand at 639.245 kb on - strand at 639.292 kb on + strand at 639.357 kb on + strand at 639.358 kb on - strand at 639.398 kb on + strand, within RPSI07_RS02165 at 639.398 kb on + strand, within RPSI07_RS02165 at 639.398 kb on + strand, within RPSI07_RS02165 at 639.398 kb on + strand, within RPSI07_RS02165 at 639.399 kb on - strand, within RPSI07_RS02165 at 639.399 kb on - strand, within RPSI07_RS02165 at 639.399 kb on - strand, within RPSI07_RS02165 at 639.399 kb on - strand, within RPSI07_RS02165 at 639.399 kb on - strand at 639.399 kb on - strand, within RPSI07_RS02165 at 639.432 kb on - strand, within RPSI07_RS02165 at 639.432 kb on - strand, within RPSI07_RS02165 at 639.435 kb on - strand, within RPSI07_RS02165 at 639.553 kb on + strand, within RPSI07_RS02165 at 639.748 kb on + strand at 639.748 kb on + strand at 639.749 kb on - strand at 639.749 kb on - strand at 639.749 kb on - strand at 639.755 kb on + strand at 639.756 kb on - strand at 639.770 kb on + strand at 639.815 kb on + strand at 639.815 kb on + strand at 639.878 kb on + strand, within RPSI07_RS02170 at 639.878 kb on + strand, within RPSI07_RS02170 at 639.878 kb on + strand, within RPSI07_RS02170 at 639.878 kb on + strand, within RPSI07_RS02170
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 637,940 + RPSI07_RS02150 0.84 -0.5 637,940 + RPSI07_RS02150 0.84 -0.0 637,941 - RPSI07_RS02150 0.84 -0.7 637,941 - RPSI07_RS02150 0.84 -0.6 637,941 - RPSI07_RS02150 0.84 -0.3 637,941 - RPSI07_RS02150 0.84 +0.6 637,941 - RPSI07_RS02150 0.84 -0.3 637,941 - RPSI07_RS02150 0.84 -0.0 637,941 - RPSI07_RS02150 0.84 -0.9 637,941 - RPSI07_RS02150 0.84 +0.2 638,100 - -0.8 638,111 + -0.1 638,112 - -0.9 638,112 - -0.3 638,144 + -1.0 638,248 + RPSI07_RS02155 0.23 +3.6 638,283 + RPSI07_RS02155 0.30 +0.8 638,340 + RPSI07_RS02155 0.41 +1.8 638,375 - RPSI07_RS02155 0.48 +0.5 638,375 - RPSI07_RS02155 0.48 -0.4 638,434 + RPSI07_RS02155 0.60 -2.4 638,503 + RPSI07_RS02155 0.73 +0.4 638,503 + RPSI07_RS02155 0.73 +1.8 638,503 + RPSI07_RS02155 0.73 -0.7 638,504 - RPSI07_RS02155 0.74 -0.5 638,504 - RPSI07_RS02155 0.74 +1.8 638,506 + RPSI07_RS02155 0.74 -0.1 638,507 - RPSI07_RS02155 0.74 -0.2 638,532 + RPSI07_RS02155 0.79 -0.4 638,624 + -0.2 638,624 + -1.2 638,650 + +0.4 638,650 + +0.4 638,712 + +0.0 638,712 + +0.5 638,712 + +4.1 638,712 + -0.6 638,713 - +0.2 638,713 - +0.0 638,713 - -0.8 638,840 + RPSI07_RS02160 0.44 -1.5 638,840 + RPSI07_RS02160 0.44 -0.2 638,840 + RPSI07_RS02160 0.44 -1.5 638,840 + RPSI07_RS02160 0.44 +0.0 638,840 + RPSI07_RS02160 0.44 -1.4 638,841 - RPSI07_RS02160 0.44 +1.0 638,841 - RPSI07_RS02160 0.44 -0.2 638,841 - RPSI07_RS02160 0.44 -0.2 638,841 - RPSI07_RS02160 0.44 -0.2 638,841 - RPSI07_RS02160 0.44 -0.7 638,841 - RPSI07_RS02160 0.44 +0.0 638,841 - RPSI07_RS02160 0.44 +2.1 638,841 - RPSI07_RS02160 0.44 -1.9 638,841 - RPSI07_RS02160 0.44 +0.8 638,841 - RPSI07_RS02160 0.44 +0.1 638,841 - RPSI07_RS02160 0.44 +0.4 638,841 - RPSI07_RS02160 0.44 -0.5 638,841 - RPSI07_RS02160 0.44 +0.3 638,841 - RPSI07_RS02160 0.44 +0.8 638,841 - RPSI07_RS02160 0.44 -2.9 638,841 - RPSI07_RS02160 0.44 -0.9 638,846 + RPSI07_RS02160 0.46 -1.2 638,846 + RPSI07_RS02160 0.46 +0.8 638,847 - RPSI07_RS02160 0.46 -0.2 639,090 + -0.5 639,090 + -1.1 639,125 - +0.4 639,240 + -0.3 639,240 + +3.1 639,241 - -0.8 639,241 - -1.2 639,241 - +2.4 639,241 - +1.8 639,241 - -1.2 639,241 - -0.1 639,244 + -0.4 639,244 + -0.3 639,244 + +0.8 639,244 + -1.0 639,244 + +3.1 639,244 + -0.9 639,244 + -0.2 639,245 - -1.5 639,245 - -0.7 639,245 - -1.4 639,245 - +0.3 639,245 - -1.1 639,245 - -0.2 639,245 - +1.5 639,245 - -0.6 639,292 + -0.5 639,357 + +1.8 639,358 - +0.2 639,398 + RPSI07_RS02165 0.16 +2.1 639,398 + RPSI07_RS02165 0.16 -0.2 639,398 + RPSI07_RS02165 0.16 +1.6 639,398 + RPSI07_RS02165 0.16 +0.3 639,399 - RPSI07_RS02165 0.16 -0.2 639,399 - RPSI07_RS02165 0.16 +0.8 639,399 - RPSI07_RS02165 0.16 -0.0 639,399 - RPSI07_RS02165 0.16 +1.0 639,399 - -1.2 639,399 - RPSI07_RS02165 0.16 +2.4 639,432 - RPSI07_RS02165 0.25 +1.5 639,432 - RPSI07_RS02165 0.25 +2.8 639,435 - RPSI07_RS02165 0.26 +0.8 639,553 + RPSI07_RS02165 0.58 -0.1 639,748 + -0.1 639,748 + -0.2 639,749 - +0.1 639,749 - +0.5 639,749 - +1.8 639,755 + -0.1 639,756 - +2.8 639,770 + +0.8 639,815 + +0.2 639,815 + -0.5 639,878 + RPSI07_RS02170 0.10 -0.6 639,878 + RPSI07_RS02170 0.10 -2.2 639,878 + RPSI07_RS02170 0.10 +1.8 639,878 + RPSI07_RS02170 0.10 -0.8
Or see this region's nucleotide sequence