Experiment: V1_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29010 and ABID97_RS29015 are separated by 184 nucleotides ABID97_RS29015 and ABID97_RS29020 are separated by 101 nucleotides
ABID97_RS29010: ABID97_RS29010 - SMP-30/gluconolactonase/LRE family protein, at 719,782 to 720,687
_RS29010
ABID97_RS29015: ABID97_RS29015 - transcriptional regulator GcvA, at 720,872 to 721,768
_RS29015
ABID97_RS29020: ABID97_RS29020 - tripartite tricarboxylate transporter substrate binding protein, at 721,870 to 722,856
_RS29020
Position (kb) 720
721
722 Strain fitness (log2 ratio) -2
-1
0
1
2 at 719.906 kb on + strand, within ABID97_RS29010 at 719.906 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.155 kb on + strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.156 kb on - strand, within ABID97_RS29010 at 720.249 kb on - strand, within ABID97_RS29010 at 720.251 kb on + strand, within ABID97_RS29010 at 720.251 kb on + strand, within ABID97_RS29010 at 720.252 kb on - strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.305 kb on + strand, within ABID97_RS29010 at 720.306 kb on - strand, within ABID97_RS29010 at 720.375 kb on - strand, within ABID97_RS29010 at 720.432 kb on - strand, within ABID97_RS29010 at 720.500 kb on + strand, within ABID97_RS29010 at 720.501 kb on - strand, within ABID97_RS29010 at 720.501 kb on - strand, within ABID97_RS29010 at 721.087 kb on - strand, within ABID97_RS29015 at 721.782 kb on + strand at 721.834 kb on + strand at 721.963 kb on + strand at 722.146 kb on + strand, within ABID97_RS29020 at 722.147 kb on - strand, within ABID97_RS29020 at 722.197 kb on + strand, within ABID97_RS29020 at 722.198 kb on - strand, within ABID97_RS29020 at 722.245 kb on + strand, within ABID97_RS29020 at 722.245 kb on + strand, within ABID97_RS29020 at 722.245 kb on + strand, within ABID97_RS29020 at 722.246 kb on - strand, within ABID97_RS29020 at 722.246 kb on - strand, within ABID97_RS29020 at 722.246 kb on - strand, within ABID97_RS29020 at 722.351 kb on - strand, within ABID97_RS29020 at 722.437 kb on + strand, within ABID97_RS29020 at 722.623 kb on + strand, within ABID97_RS29020 at 722.624 kb on - strand, within ABID97_RS29020 at 722.624 kb on - strand, within ABID97_RS29020
Per-strain Table
Position Strand Gene LocusTag Fraction V1_1 remove 719,906 + ABID97_RS29010 0.14 +0.0 719,906 + ABID97_RS29010 0.14 +0.1 720,155 + ABID97_RS29010 0.41 +0.3 720,155 + ABID97_RS29010 0.41 +0.3 720,155 + ABID97_RS29010 0.41 -1.0 720,155 + ABID97_RS29010 0.41 -0.4 720,156 - ABID97_RS29010 0.41 -0.1 720,156 - ABID97_RS29010 0.41 -0.2 720,156 - ABID97_RS29010 0.41 -0.0 720,249 - ABID97_RS29010 0.52 +0.2 720,251 + ABID97_RS29010 0.52 +1.2 720,251 + ABID97_RS29010 0.52 +0.8 720,252 - ABID97_RS29010 0.52 +0.2 720,305 + ABID97_RS29010 0.58 -1.9 720,305 + ABID97_RS29010 0.58 -0.0 720,305 + ABID97_RS29010 0.58 -0.6 720,306 - ABID97_RS29010 0.58 +0.0 720,375 - ABID97_RS29010 0.65 -2.3 720,432 - ABID97_RS29010 0.72 -0.1 720,500 + ABID97_RS29010 0.79 +0.4 720,501 - ABID97_RS29010 0.79 -0.1 720,501 - ABID97_RS29010 0.79 -0.4 721,087 - ABID97_RS29015 0.24 +1.0 721,782 + -0.0 721,834 + -0.3 721,963 + -0.5 722,146 + ABID97_RS29020 0.28 -0.3 722,147 - ABID97_RS29020 0.28 +0.5 722,197 + ABID97_RS29020 0.33 -0.6 722,198 - ABID97_RS29020 0.33 +0.0 722,245 + ABID97_RS29020 0.38 -0.4 722,245 + ABID97_RS29020 0.38 -0.0 722,245 + ABID97_RS29020 0.38 +0.7 722,246 - ABID97_RS29020 0.38 -0.3 722,246 - ABID97_RS29020 0.38 +1.4 722,246 - ABID97_RS29020 0.38 -1.0 722,351 - ABID97_RS29020 0.49 +0.8 722,437 + ABID97_RS29020 0.57 +0.2 722,623 + ABID97_RS29020 0.76 +0.0 722,624 - ABID97_RS29020 0.76 +2.2 722,624 - ABID97_RS29020 0.76 +0.1
Or see this region's nucleotide sequence