Experiment: V1_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28650 and ABID97_RS28655 overlap by 11 nucleotides ABID97_RS28655 and ABID97_RS28660 overlap by 14 nucleotides ABID97_RS28660 and ABID97_RS28665 are separated by 29 nucleotides ABID97_RS28665 and ABID97_RS28670 are separated by 149 nucleotides
ABID97_RS28650: ABID97_RS28650 - cytochrome ubiquinol oxidase subunit I, at 649,527 to 650,936
_RS28650
ABID97_RS28655: ABID97_RS28655 - cytochrome d ubiquinol oxidase subunit II, at 650,926 to 651,933
_RS28655
ABID97_RS28660: ABID97_RS28660 - DUF2474 domain-containing protein, at 651,920 to 652,069
_RS28660
ABID97_RS28665: ABID97_RS28665 - response regulator, at 652,099 to 652,470
_RS28665
ABID97_RS28670: ABID97_RS28670 - hypothetical protein, at 652,620 to 652,898
_RS28670
Position (kb) 651
652
653 Strain fitness (log2 ratio) -1
0
1 at 650.983 kb on + strand at 650.983 kb on + strand at 650.983 kb on + strand at 650.984 kb on - strand at 650.984 kb on - strand at 650.984 kb on - strand at 651.151 kb on + strand, within ABID97_RS28655 at 651.175 kb on + strand, within ABID97_RS28655 at 651.176 kb on - strand, within ABID97_RS28655 at 651.436 kb on + strand, within ABID97_RS28655 at 651.619 kb on + strand, within ABID97_RS28655 at 651.658 kb on + strand, within ABID97_RS28655 at 651.736 kb on + strand, within ABID97_RS28655 at 651.738 kb on + strand, within ABID97_RS28655 at 651.871 kb on + strand at 651.871 kb on + strand at 651.872 kb on - strand at 651.872 kb on - strand at 652.013 kb on + strand, within ABID97_RS28660 at 652.013 kb on + strand, within ABID97_RS28660 at 652.215 kb on - strand, within ABID97_RS28665 at 652.235 kb on + strand, within ABID97_RS28665 at 652.235 kb on + strand, within ABID97_RS28665 at 652.235 kb on + strand, within ABID97_RS28665 at 652.235 kb on + strand, within ABID97_RS28665 at 652.236 kb on - strand, within ABID97_RS28665 at 652.236 kb on - strand, within ABID97_RS28665 at 652.540 kb on - strand at 652.540 kb on - strand at 652.540 kb on - strand at 652.540 kb on - strand at 652.558 kb on - strand at 652.824 kb on + strand, within ABID97_RS28670 at 652.825 kb on - strand, within ABID97_RS28670 at 652.990 kb on + strand at 653.023 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_1 remove 650,983 + -0.3 650,983 + -0.3 650,983 + +0.6 650,984 - -0.4 650,984 - -0.2 650,984 - -0.1 651,151 + ABID97_RS28655 0.22 -0.2 651,175 + ABID97_RS28655 0.25 +0.2 651,176 - ABID97_RS28655 0.25 -1.0 651,436 + ABID97_RS28655 0.51 +0.2 651,619 + ABID97_RS28655 0.69 -0.1 651,658 + ABID97_RS28655 0.73 +0.1 651,736 + ABID97_RS28655 0.80 -1.1 651,738 + ABID97_RS28655 0.81 +0.4 651,871 + -0.1 651,871 + +0.8 651,872 - -0.0 651,872 - -0.5 652,013 + ABID97_RS28660 0.62 +0.4 652,013 + ABID97_RS28660 0.62 +0.4 652,215 - ABID97_RS28665 0.31 -0.2 652,235 + ABID97_RS28665 0.37 -0.8 652,235 + ABID97_RS28665 0.37 +0.1 652,235 + ABID97_RS28665 0.37 +1.2 652,235 + ABID97_RS28665 0.37 -0.0 652,236 - ABID97_RS28665 0.37 +1.6 652,236 - ABID97_RS28665 0.37 +0.0 652,540 - -0.1 652,540 - +0.5 652,540 - +0.1 652,540 - +0.3 652,558 - +0.4 652,824 + ABID97_RS28670 0.73 +1.7 652,825 - ABID97_RS28670 0.73 -0.1 652,990 + +0.2 653,023 + +0.3
Or see this region's nucleotide sequence