Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27275

Experiment: V1_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27265 and ABID97_RS27270 are separated by 10 nucleotidesABID97_RS27270 and ABID97_RS27275 are separated by 59 nucleotidesABID97_RS27275 and ABID97_RS27280 are separated by 50 nucleotidesABID97_RS27280 and ABID97_RS27285 are separated by 21 nucleotides ABID97_RS27265: ABID97_RS27265 - fumarylacetoacetate hydrolase family protein, at 367,120 to 367,989 _RS27265 ABID97_RS27270: ABID97_RS27270 - alpha/beta hydrolase, at 368,000 to 368,788 _RS27270 ABID97_RS27275: ABID97_RS27275 - amidohydrolase family protein, at 368,848 to 370,188 _RS27275 ABID97_RS27280: ABID97_RS27280 - nuclear transport factor 2 family protein, at 370,239 to 370,604 _RS27280 ABID97_RS27285: ABID97_RS27285 - LysR family transcriptional regulator, at 370,626 to 371,519 _RS27285 Position (kb) 368 369 370 371Strain fitness (log2 ratio) -1 0 1at 368.856 kb on + strandat 369.736 kb on + strand, within ABID97_RS27275at 369.877 kb on + strand, within ABID97_RS27275at 369.878 kb on - strand, within ABID97_RS27275at 371.125 kb on + strand, within ABID97_RS27285at 371.125 kb on + strand, within ABID97_RS27285at 371.126 kb on - strand, within ABID97_RS27285

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_1
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368,856 + +1.0
369,736 + ABID97_RS27275 0.66 +0.0
369,877 + ABID97_RS27275 0.77 +0.0
369,878 - ABID97_RS27275 0.77 +0.4
371,125 + ABID97_RS27285 0.56 +0.2
371,125 + ABID97_RS27285 0.56 +0.3
371,126 - ABID97_RS27285 0.56 -0.4

Or see this region's nucleotide sequence