Experiment: V1_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23290 and ABID97_RS23295 are separated by 9 nucleotides ABID97_RS23295 and ABID97_RS23300 are separated by 12 nucleotides ABID97_RS23300 and ABID97_RS23305 overlap by 4 nucleotides
ABID97_RS23290: ABID97_RS23290 - penicillin-binding protein 1A, at 4,815,945 to 4,818,353
_RS23290
ABID97_RS23295: ABID97_RS23295 - iron donor protein CyaY, at 4,818,363 to 4,818,698
_RS23295
ABID97_RS23300: ABID97_RS23300 - lipoprotein, at 4,818,711 to 4,818,980
_RS23300
ABID97_RS23305: ABID97_RS23305 - diaminopimelate decarboxylase, at 4,818,977 to 4,820,260
_RS23305
Position (kb) 4818
4819 Strain fitness (log2 ratio) -1
0
1
2
3 at 4817.733 kb on + strand, within ABID97_RS23290 at 4817.959 kb on - strand, within ABID97_RS23290 at 4818.046 kb on - strand, within ABID97_RS23290 at 4818.114 kb on + strand at 4818.114 kb on + strand at 4818.115 kb on - strand at 4818.115 kb on - strand at 4818.201 kb on + strand at 4818.201 kb on + strand at 4818.202 kb on - strand at 4818.202 kb on - strand at 4818.204 kb on + strand at 4818.204 kb on + strand at 4818.205 kb on - strand at 4818.213 kb on + strand at 4818.213 kb on + strand at 4818.683 kb on - strand at 4818.683 kb on - strand at 4818.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_1 remove 4,817,733 + ABID97_RS23290 0.74 +0.8 4,817,959 - ABID97_RS23290 0.84 +0.2 4,818,046 - ABID97_RS23290 0.87 -0.2 4,818,114 + -0.2 4,818,114 + -1.7 4,818,115 - -0.3 4,818,115 - -0.4 4,818,201 + -0.2 4,818,201 + +0.3 4,818,202 - -0.3 4,818,202 - +0.0 4,818,204 + +2.8 4,818,204 + -0.0 4,818,205 - +2.4 4,818,213 + +0.4 4,818,213 + +0.2 4,818,683 - -0.0 4,818,683 - -0.2 4,818,711 - -0.9
Or see this region's nucleotide sequence