Experiment: V1_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17960 and ABID97_RS17965 overlap by 4 nucleotides ABID97_RS17965 and ABID97_RS17970 overlap by 4 nucleotides ABID97_RS17970 and ABID97_RS17975 are separated by 15 nucleotides ABID97_RS17975 and ABID97_RS17980 are separated by 3 nucleotides
ABID97_RS17960: ABID97_RS17960 - pyridoxal phosphate-dependent aminotransferase, at 3,710,964 to 3,712,160
_RS17960
ABID97_RS17965: ABID97_RS17965 - YbgC/FadM family acyl-CoA thioesterase, at 3,712,157 to 3,712,615
_RS17965
ABID97_RS17970: ABID97_RS17970 - protein TolQ, at 3,712,612 to 3,713,334
_RS17970
ABID97_RS17975: ABID97_RS17975 - biopolymer transporter ExbD, at 3,713,350 to 3,713,787
_RS17975
ABID97_RS17980: ABID97_RS17980 - cell envelope integrity protein TolA, at 3,713,791 to 3,714,711
_RS17980
Position (kb) 3712
3713
3714 Strain fitness (log2 ratio) -2
-1
0
1 at 3711.790 kb on - strand, within ABID97_RS17960 at 3711.933 kb on + strand, within ABID97_RS17960 at 3711.934 kb on - strand, within ABID97_RS17960 at 3711.934 kb on - strand, within ABID97_RS17960 at 3711.934 kb on - strand, within ABID97_RS17960 at 3712.163 kb on + strand at 3712.220 kb on + strand, within ABID97_RS17965 at 3712.221 kb on - strand, within ABID97_RS17965 at 3712.221 kb on - strand, within ABID97_RS17965 at 3712.221 kb on - strand, within ABID97_RS17965 at 3712.221 kb on - strand, within ABID97_RS17965 at 3712.229 kb on + strand, within ABID97_RS17965 at 3712.229 kb on + strand, within ABID97_RS17965 at 3712.230 kb on - strand, within ABID97_RS17965 at 3712.230 kb on - strand, within ABID97_RS17965 at 3712.346 kb on + strand, within ABID97_RS17965 at 3712.346 kb on + strand, within ABID97_RS17965 at 3712.422 kb on + strand, within ABID97_RS17965 at 3712.562 kb on - strand, within ABID97_RS17965 at 3712.562 kb on - strand, within ABID97_RS17965 at 3712.730 kb on - strand, within ABID97_RS17970 at 3712.883 kb on - strand, within ABID97_RS17970 at 3713.029 kb on + strand, within ABID97_RS17970 at 3713.239 kb on + strand, within ABID97_RS17970 at 3713.239 kb on + strand, within ABID97_RS17970 at 3713.240 kb on - strand, within ABID97_RS17970 at 3713.699 kb on - strand, within ABID97_RS17975 at 3713.785 kb on + strand at 3713.785 kb on + strand at 3713.786 kb on - strand at 3713.786 kb on - strand at 3713.786 kb on - strand at 3713.786 kb on - strand at 3713.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_1 remove 3,711,790 - ABID97_RS17960 0.69 -0.7 3,711,933 + ABID97_RS17960 0.81 +1.4 3,711,934 - ABID97_RS17960 0.81 -0.5 3,711,934 - ABID97_RS17960 0.81 -0.1 3,711,934 - ABID97_RS17960 0.81 +0.0 3,712,163 + -0.1 3,712,220 + ABID97_RS17965 0.14 +0.1 3,712,221 - ABID97_RS17965 0.14 +0.2 3,712,221 - ABID97_RS17965 0.14 +0.1 3,712,221 - ABID97_RS17965 0.14 -0.1 3,712,221 - ABID97_RS17965 0.14 -1.4 3,712,229 + ABID97_RS17965 0.16 -0.1 3,712,229 + ABID97_RS17965 0.16 -0.6 3,712,230 - ABID97_RS17965 0.16 +0.2 3,712,230 - ABID97_RS17965 0.16 +1.6 3,712,346 + ABID97_RS17965 0.41 +0.9 3,712,346 + ABID97_RS17965 0.41 +0.2 3,712,422 + ABID97_RS17965 0.58 +0.3 3,712,562 - ABID97_RS17965 0.88 +1.2 3,712,562 - ABID97_RS17965 0.88 -0.2 3,712,730 - ABID97_RS17970 0.16 -0.5 3,712,883 - ABID97_RS17970 0.37 -0.9 3,713,029 + ABID97_RS17970 0.58 -2.0 3,713,239 + ABID97_RS17970 0.87 -1.9 3,713,239 + ABID97_RS17970 0.87 -1.7 3,713,240 - ABID97_RS17970 0.87 -1.6 3,713,699 - ABID97_RS17975 0.80 -1.3 3,713,785 + -0.3 3,713,785 + +0.0 3,713,786 - +0.4 3,713,786 - -0.1 3,713,786 - -0.4 3,713,786 - +0.1 3,713,786 - -0.9
Or see this region's nucleotide sequence