Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15975

Experiment: V1_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS15970 and ABID97_RS15975 are separated by 148 nucleotidesABID97_RS15975 and ABID97_RS15980 are separated by 122 nucleotides ABID97_RS15970: ABID97_RS15970 - hypothetical protein, at 3,308,632 to 3,309,582 _RS15970 ABID97_RS15975: ABID97_RS15975 - folate-binding protein, at 3,309,731 to 3,310,657 _RS15975 ABID97_RS15980: ABID97_RS15980 - endolytic transglycosylase MltG, at 3,310,780 to 3,311,817 _RS15980 Position (kb) 3309 3310 3311Strain fitness (log2 ratio) -1 0 1 2at 3309.251 kb on + strand, within ABID97_RS15970at 3309.252 kb on - strand, within ABID97_RS15970at 3309.252 kb on - strand, within ABID97_RS15970at 3309.252 kb on - strand, within ABID97_RS15970at 3309.360 kb on - strand, within ABID97_RS15970at 3309.360 kb on - strand, within ABID97_RS15970at 3309.360 kb on - strand, within ABID97_RS15970at 3309.389 kb on + strand, within ABID97_RS15970at 3309.408 kb on - strand, within ABID97_RS15970at 3309.622 kb on + strandat 3309.648 kb on - strandat 3309.732 kb on + strandat 3309.732 kb on + strandat 3309.732 kb on + strandat 3309.732 kb on + strandat 3309.732 kb on + strandat 3309.732 kb on + strandat 3309.733 kb on - strandat 3309.733 kb on - strandat 3309.733 kb on - strandat 3309.733 kb on - strandat 3310.666 kb on + strandat 3310.666 kb on + strandat 3310.667 kb on - strandat 3310.667 kb on - strandat 3310.985 kb on + strand, within ABID97_RS15980at 3310.985 kb on + strand, within ABID97_RS15980at 3310.985 kb on + strand, within ABID97_RS15980at 3310.985 kb on + strand, within ABID97_RS15980at 3310.986 kb on - strand, within ABID97_RS15980at 3310.986 kb on - strand, within ABID97_RS15980

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction V1_1
remove
3,309,251 + ABID97_RS15970 0.65 +0.3
3,309,252 - ABID97_RS15970 0.65 +0.0
3,309,252 - ABID97_RS15970 0.65 +1.0
3,309,252 - ABID97_RS15970 0.65 +1.6
3,309,360 - ABID97_RS15970 0.77 +0.1
3,309,360 - ABID97_RS15970 0.77 -0.5
3,309,360 - ABID97_RS15970 0.77 -0.8
3,309,389 + ABID97_RS15970 0.80 +0.6
3,309,408 - ABID97_RS15970 0.82 +0.1
3,309,622 + +0.0
3,309,648 - +0.6
3,309,732 + -0.1
3,309,732 + -0.3
3,309,732 + -0.2
3,309,732 + +0.4
3,309,732 + -0.3
3,309,732 + -0.8
3,309,733 - +2.4
3,309,733 - +0.8
3,309,733 - +0.3
3,309,733 - +0.8
3,310,666 + -0.6
3,310,666 + +0.1
3,310,667 - +0.1
3,310,667 - +0.0
3,310,985 + ABID97_RS15980 0.20 -0.8
3,310,985 + ABID97_RS15980 0.20 -1.3
3,310,985 + ABID97_RS15980 0.20 -0.8
3,310,985 + ABID97_RS15980 0.20 -1.5
3,310,986 - ABID97_RS15980 0.20 -1.1
3,310,986 - ABID97_RS15980 0.20 -0.9

Or see this region's nucleotide sequence