Experiment: V1_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12820 and ABID97_RS12825 are separated by 74 nucleotides ABID97_RS12825 and ABID97_RS12830 overlap by 4 nucleotides ABID97_RS12830 and ABID97_RS12835 are separated by 12 nucleotides
ABID97_RS12820: ABID97_RS12820 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,655,760 to 2,656,938
_RS12820
ABID97_RS12825: ABID97_RS12825 - ABC transporter permease, at 2,657,013 to 2,657,810
_RS12825
ABID97_RS12830: ABID97_RS12830 - tripartite tricarboxylate transporter substrate binding protein, at 2,657,807 to 2,658,802
_RS12830
ABID97_RS12835: ABID97_RS12835 - TonB-dependent receptor, at 2,658,815 to 2,661,109
_RS12835
Position (kb)
2657
2658
2659 Strain fitness (log2 ratio)
-1
0
1 at 2656.919 kb on + strand at 2657.157 kb on + strand, within ABID97_RS12825 at 2657.166 kb on + strand, within ABID97_RS12825 at 2657.167 kb on - strand, within ABID97_RS12825 at 2657.167 kb on - strand, within ABID97_RS12825 at 2657.184 kb on + strand, within ABID97_RS12825 at 2657.253 kb on + strand, within ABID97_RS12825 at 2657.553 kb on + strand, within ABID97_RS12825 at 2657.647 kb on - strand, within ABID97_RS12825 at 2657.647 kb on - strand, within ABID97_RS12825 at 2658.096 kb on - strand, within ABID97_RS12830 at 2658.380 kb on + strand, within ABID97_RS12830 at 2658.380 kb on + strand, within ABID97_RS12830 at 2658.381 kb on - strand, within ABID97_RS12830 at 2658.686 kb on + strand, within ABID97_RS12830
Per-strain Table
Position Strand Gene LocusTag Fraction V1_1 remove 2,656,919 + -0.1 2,657,157 + ABID97_RS12825 0.18 -0.5 2,657,166 + ABID97_RS12825 0.19 +0.1 2,657,167 - ABID97_RS12825 0.19 -0.1 2,657,167 - ABID97_RS12825 0.19 +0.2 2,657,184 + ABID97_RS12825 0.21 +0.2 2,657,253 + ABID97_RS12825 0.30 -0.9 2,657,553 + ABID97_RS12825 0.68 -0.2 2,657,647 - ABID97_RS12825 0.79 -0.5 2,657,647 - ABID97_RS12825 0.79 +0.1 2,658,096 - ABID97_RS12830 0.29 -1.5 2,658,380 + ABID97_RS12830 0.58 +0.8 2,658,380 + ABID97_RS12830 0.58 +0.3 2,658,381 - ABID97_RS12830 0.58 +1.0 2,658,686 + ABID97_RS12830 0.88 -0.2
Or see this region's nucleotide sequence