Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12830

Experiment: V1_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12820 and ABID97_RS12825 are separated by 74 nucleotidesABID97_RS12825 and ABID97_RS12830 overlap by 4 nucleotidesABID97_RS12830 and ABID97_RS12835 are separated by 12 nucleotides ABID97_RS12820: ABID97_RS12820 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,655,760 to 2,656,938 _RS12820 ABID97_RS12825: ABID97_RS12825 - ABC transporter permease, at 2,657,013 to 2,657,810 _RS12825 ABID97_RS12830: ABID97_RS12830 - tripartite tricarboxylate transporter substrate binding protein, at 2,657,807 to 2,658,802 _RS12830 ABID97_RS12835: ABID97_RS12835 - TonB-dependent receptor, at 2,658,815 to 2,661,109 _RS12835 Position (kb) 2657 2658 2659Strain fitness (log2 ratio) -1 0 1at 2656.919 kb on + strandat 2657.157 kb on + strand, within ABID97_RS12825at 2657.166 kb on + strand, within ABID97_RS12825at 2657.167 kb on - strand, within ABID97_RS12825at 2657.167 kb on - strand, within ABID97_RS12825at 2657.184 kb on + strand, within ABID97_RS12825at 2657.253 kb on + strand, within ABID97_RS12825at 2657.553 kb on + strand, within ABID97_RS12825at 2657.647 kb on - strand, within ABID97_RS12825at 2657.647 kb on - strand, within ABID97_RS12825at 2658.096 kb on - strand, within ABID97_RS12830at 2658.380 kb on + strand, within ABID97_RS12830at 2658.380 kb on + strand, within ABID97_RS12830at 2658.381 kb on - strand, within ABID97_RS12830at 2658.686 kb on + strand, within ABID97_RS12830

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_1
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2,656,919 + -0.1
2,657,157 + ABID97_RS12825 0.18 -0.5
2,657,166 + ABID97_RS12825 0.19 +0.1
2,657,167 - ABID97_RS12825 0.19 -0.1
2,657,167 - ABID97_RS12825 0.19 +0.2
2,657,184 + ABID97_RS12825 0.21 +0.2
2,657,253 + ABID97_RS12825 0.30 -0.9
2,657,553 + ABID97_RS12825 0.68 -0.2
2,657,647 - ABID97_RS12825 0.79 -0.5
2,657,647 - ABID97_RS12825 0.79 +0.1
2,658,096 - ABID97_RS12830 0.29 -1.5
2,658,380 + ABID97_RS12830 0.58 +0.8
2,658,380 + ABID97_RS12830 0.58 +0.3
2,658,381 - ABID97_RS12830 0.58 +1.0
2,658,686 + ABID97_RS12830 0.88 -0.2

Or see this region's nucleotide sequence