Experiment: V1_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04235 and ABID97_RS04240 are separated by 127 nucleotides ABID97_RS04240 and ABID97_RS04245 are separated by 103 nucleotides ABID97_RS04245 and ABID97_RS04250 are separated by 95 nucleotides
ABID97_RS04235: ABID97_RS04235 - TetR/AcrR family transcriptional regulator, at 870,929 to 871,639
_RS04235
ABID97_RS04240: ABID97_RS04240 - phasin family protein, at 871,767 to 872,273
_RS04240
ABID97_RS04245: ABID97_RS04245 - acyl-CoA thioesterase, at 872,377 to 872,820
_RS04245
ABID97_RS04250: ABID97_RS04250 - LysR family transcriptional regulator, at 872,916 to 873,812
_RS04250
Position (kb) 872
873 Strain fitness (log2 ratio) -1
0
1 at 871.453 kb on - strand, within ABID97_RS04235 at 871.453 kb on - strand, within ABID97_RS04235 at 871.500 kb on + strand, within ABID97_RS04235 at 871.501 kb on - strand, within ABID97_RS04235 at 871.501 kb on - strand, within ABID97_RS04235 at 871.501 kb on - strand, within ABID97_RS04235 at 871.503 kb on + strand, within ABID97_RS04235 at 871.504 kb on - strand, within ABID97_RS04235 at 871.504 kb on - strand, within ABID97_RS04235 at 871.656 kb on + strand at 871.675 kb on + strand at 871.675 kb on + strand at 871.675 kb on + strand at 871.676 kb on - strand at 871.676 kb on - strand at 871.676 kb on - strand at 871.680 kb on + strand at 871.680 kb on + strand at 871.680 kb on + strand at 871.680 kb on + strand at 871.680 kb on + strand at 871.680 kb on + strand at 871.681 kb on - strand at 871.681 kb on - strand at 871.681 kb on - strand at 871.698 kb on + strand at 871.699 kb on - strand at 872.302 kb on - strand at 872.306 kb on + strand at 872.330 kb on - strand at 872.378 kb on + strand at 872.378 kb on + strand at 872.379 kb on - strand at 872.598 kb on + strand, within ABID97_RS04245 at 872.601 kb on + strand, within ABID97_RS04245 at 872.861 kb on + strand at 872.861 kb on + strand at 873.010 kb on + strand, within ABID97_RS04250 at 873.010 kb on + strand, within ABID97_RS04250 at 873.011 kb on - strand, within ABID97_RS04250 at 873.011 kb on - strand, within ABID97_RS04250 at 873.337 kb on + strand, within ABID97_RS04250 at 873.338 kb on - strand, within ABID97_RS04250 at 873.591 kb on + strand, within ABID97_RS04250 at 873.591 kb on + strand, within ABID97_RS04250 at 873.592 kb on - strand, within ABID97_RS04250 at 873.625 kb on + strand, within ABID97_RS04250 at 873.626 kb on - strand, within ABID97_RS04250 at 873.767 kb on - strand at 873.767 kb on - strand at 873.767 kb on - strand at 873.767 kb on - strand at 873.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_1 remove 871,453 - ABID97_RS04235 0.74 +0.1 871,453 - ABID97_RS04235 0.74 +1.4 871,500 + ABID97_RS04235 0.80 -0.7 871,501 - ABID97_RS04235 0.80 -0.0 871,501 - ABID97_RS04235 0.80 -0.3 871,501 - ABID97_RS04235 0.80 +0.5 871,503 + ABID97_RS04235 0.81 -0.6 871,504 - ABID97_RS04235 0.81 -0.5 871,504 - ABID97_RS04235 0.81 +0.8 871,656 + +0.5 871,675 + +0.2 871,675 + -0.7 871,675 + +0.1 871,676 - -0.0 871,676 - +0.6 871,676 - +1.0 871,680 + -0.0 871,680 + +0.9 871,680 + -0.2 871,680 + -0.0 871,680 + +0.3 871,680 + +0.6 871,681 - +0.0 871,681 - -0.2 871,681 - -0.8 871,698 + +0.2 871,699 - +0.1 872,302 - -0.2 872,306 + +0.4 872,330 - +0.3 872,378 + -0.2 872,378 + -0.7 872,379 - +0.6 872,598 + ABID97_RS04245 0.50 -1.3 872,601 + ABID97_RS04245 0.50 -1.1 872,861 + -0.3 872,861 + -0.7 873,010 + ABID97_RS04250 0.10 +0.1 873,010 + ABID97_RS04250 0.10 +0.5 873,011 - ABID97_RS04250 0.11 +0.4 873,011 - ABID97_RS04250 0.11 +0.4 873,337 + ABID97_RS04250 0.47 -0.0 873,338 - ABID97_RS04250 0.47 +0.4 873,591 + ABID97_RS04250 0.75 -0.3 873,591 + ABID97_RS04250 0.75 -0.1 873,592 - ABID97_RS04250 0.75 -0.8 873,625 + ABID97_RS04250 0.79 +0.3 873,626 - ABID97_RS04250 0.79 +0.1 873,767 - -0.1 873,767 - +0.3 873,767 - +0.0 873,767 - -0.0 873,767 - -0.3
Or see this region's nucleotide sequence