Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29200 and ABID97_RS29205 are separated by 33 nucleotides ABID97_RS29205 and ABID97_RS29210 are separated by 29 nucleotides ABID97_RS29210 and ABID97_RS29215 are separated by 38 nucleotides
ABID97_RS29200: ABID97_RS29200 - hybrid sensor histidine kinase/response regulator, at 759,050 to 760,825
_RS29200
ABID97_RS29205: ABID97_RS29205 - alkaline phosphatase D family protein, at 760,859 to 766,438
_RS29205
ABID97_RS29210: ABID97_RS29210 - TerC family protein, at 766,468 to 767,217
_RS29210
ABID97_RS29215: ABID97_RS29215 - LysR family transcriptional regulator, at 767,256 to 768,191
_RS29215
Position (kb) 760
761
762
763
764
765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 761.039 kb on + strand at 761.039 kb on + strand at 761.063 kb on + strand at 761.324 kb on + strand at 761.564 kb on + strand, within ABID97_RS29205 at 761.711 kb on + strand, within ABID97_RS29205 at 761.711 kb on + strand, within ABID97_RS29205 at 763.349 kb on + strand, within ABID97_RS29205 at 763.350 kb on - strand, within ABID97_RS29205 at 763.350 kb on - strand, within ABID97_RS29205 at 763.350 kb on - strand, within ABID97_RS29205 at 763.350 kb on - strand, within ABID97_RS29205 at 763.350 kb on - strand, within ABID97_RS29205 at 763.868 kb on + strand, within ABID97_RS29205 at 764.159 kb on + strand, within ABID97_RS29205 at 764.345 kb on + strand, within ABID97_RS29205 at 765.305 kb on + strand, within ABID97_RS29205 at 765.428 kb on + strand, within ABID97_RS29205 at 765.429 kb on - strand, within ABID97_RS29205 at 765.429 kb on - strand, within ABID97_RS29205 at 765.488 kb on + strand, within ABID97_RS29205 at 765.489 kb on - strand, within ABID97_RS29205 at 765.546 kb on - strand, within ABID97_RS29205 at 766.151 kb on + strand at 766.152 kb on - strand at 766.152 kb on - strand at 766.574 kb on + strand, within ABID97_RS29210 at 766.580 kb on + strand, within ABID97_RS29210 at 766.580 kb on + strand, within ABID97_RS29210 at 766.581 kb on - strand, within ABID97_RS29210 at 767.257 kb on + strand at 767.257 kb on + strand at 767.357 kb on - strand, within ABID97_RS29215
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 761,039 + -0.4 761,039 + -0.5 761,063 + -0.6 761,324 + +0.7 761,564 + ABID97_RS29205 0.13 -0.9 761,711 + ABID97_RS29205 0.15 +0.5 761,711 + ABID97_RS29205 0.15 +0.6 763,349 + ABID97_RS29205 0.45 -3.0 763,350 - ABID97_RS29205 0.45 -0.3 763,350 - ABID97_RS29205 0.45 -0.1 763,350 - ABID97_RS29205 0.45 -1.0 763,350 - ABID97_RS29205 0.45 +0.6 763,350 - ABID97_RS29205 0.45 +0.8 763,868 + ABID97_RS29205 0.54 -0.2 764,159 + ABID97_RS29205 0.59 -0.7 764,345 + ABID97_RS29205 0.62 +0.5 765,305 + ABID97_RS29205 0.80 -0.3 765,428 + ABID97_RS29205 0.82 +0.0 765,429 - ABID97_RS29205 0.82 -0.9 765,429 - ABID97_RS29205 0.82 -1.3 765,488 + ABID97_RS29205 0.83 -1.6 765,489 - ABID97_RS29205 0.83 +0.1 765,546 - ABID97_RS29205 0.84 -0.4 766,151 + +0.7 766,152 - -0.2 766,152 - +0.3 766,574 + ABID97_RS29210 0.14 -1.1 766,580 + ABID97_RS29210 0.15 -0.1 766,580 + ABID97_RS29210 0.15 -0.6 766,581 - ABID97_RS29210 0.15 -0.4 767,257 + -0.0 767,257 + +0.7 767,357 - ABID97_RS29215 0.11 -0.4
Or see this region's nucleotide sequence