Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29170 and ABID97_RS29175 are separated by 29 nucleotides ABID97_RS29175 and ABID97_RS29180 are separated by 48 nucleotides ABID97_RS29180 and ABID97_RS29185 are separated by 141 nucleotides ABID97_RS29185 and ABID97_RS29190 are separated by 64 nucleotides
ABID97_RS29170: ABID97_RS29170 - alpha/beta hydrolase, at 752,832 to 753,800
_RS29170
ABID97_RS29175: ABID97_RS29175 - SDR family oxidoreductase, at 753,830 to 754,534
_RS29175
ABID97_RS29180: ABID97_RS29180 - NADP-dependent oxidoreductase, at 754,583 to 755,584
_RS29180
ABID97_RS29185: ABID97_RS29185 - TetR/AcrR family transcriptional regulator, at 755,726 to 756,325
_RS29185
ABID97_RS29190: ABID97_RS29190 - phospholipase D family protein, at 756,390 to 758,111
_RS29190
Position (kb) 754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 753.849 kb on + strand at 753.849 kb on + strand at 753.850 kb on - strand at 754.011 kb on + strand, within ABID97_RS29175 at 754.012 kb on - strand, within ABID97_RS29175 at 754.632 kb on + strand at 754.762 kb on - strand, within ABID97_RS29180 at 755.002 kb on - strand, within ABID97_RS29180 at 755.110 kb on + strand, within ABID97_RS29180 at 755.111 kb on - strand, within ABID97_RS29180 at 755.111 kb on - strand, within ABID97_RS29180 at 755.111 kb on - strand, within ABID97_RS29180 at 755.687 kb on - strand at 756.156 kb on + strand, within ABID97_RS29185 at 756.156 kb on + strand, within ABID97_RS29185 at 756.156 kb on + strand, within ABID97_RS29185 at 756.156 kb on + strand, within ABID97_RS29185 at 756.157 kb on - strand, within ABID97_RS29185 at 756.157 kb on - strand, within ABID97_RS29185
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 753,849 + -0.1 753,849 + -0.4 753,850 - -0.5 754,011 + ABID97_RS29175 0.26 +0.2 754,012 - ABID97_RS29175 0.26 -0.7 754,632 + -0.0 754,762 - ABID97_RS29180 0.18 +0.1 755,002 - ABID97_RS29180 0.42 -0.8 755,110 + ABID97_RS29180 0.53 +0.3 755,111 - ABID97_RS29180 0.53 -0.2 755,111 - ABID97_RS29180 0.53 -0.1 755,111 - ABID97_RS29180 0.53 +0.5 755,687 - -0.0 756,156 + ABID97_RS29185 0.72 -0.7 756,156 + ABID97_RS29185 0.72 +0.1 756,156 + ABID97_RS29185 0.72 +0.5 756,156 + ABID97_RS29185 0.72 -3.3 756,157 - ABID97_RS29185 0.72 -0.1 756,157 - ABID97_RS29185 0.72 +0.3
Or see this region's nucleotide sequence