Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28085 and ABID97_RS28090 are separated by 35 nucleotides ABID97_RS28090 and ABID97_RS28095 overlap by 4 nucleotides ABID97_RS28095 and ABID97_RS28100 are separated by 65 nucleotides ABID97_RS28100 and ABID97_RS28105 overlap by 4 nucleotides
ABID97_RS28085: ABID97_RS28085 - hypothetical protein, at 534,781 to 535,431
_RS28085
ABID97_RS28090: ABID97_RS28090 - hypothetical protein, at 535,467 to 536,189
_RS28090
ABID97_RS28095: ABID97_RS28095 - hypothetical protein, at 536,186 to 536,656
_RS28095
ABID97_RS28100: ABID97_RS28100 - hypothetical protein, at 536,722 to 537,471
_RS28100
ABID97_RS28105: ABID97_RS28105 - SdrD B-like domain-containing protein, at 537,468 to 539,558
_RS28105
Position (kb) 536
537 Strain fitness (log2 ratio) -1
0
1 at 535.376 kb on - strand at 535.411 kb on + strand at 535.653 kb on + strand, within ABID97_RS28090 at 535.653 kb on + strand, within ABID97_RS28090 at 535.776 kb on - strand, within ABID97_RS28090 at 535.776 kb on - strand, within ABID97_RS28090 at 535.870 kb on - strand, within ABID97_RS28090 at 535.870 kb on - strand, within ABID97_RS28090 at 535.870 kb on - strand, within ABID97_RS28090 at 536.119 kb on - strand at 536.426 kb on + strand, within ABID97_RS28095 at 536.646 kb on + strand at 536.697 kb on + strand at 536.698 kb on - strand at 537.127 kb on + strand, within ABID97_RS28100 at 537.127 kb on + strand, within ABID97_RS28100 at 537.127 kb on + strand, within ABID97_RS28100 at 537.128 kb on - strand, within ABID97_RS28100 at 537.485 kb on + strand at 537.486 kb on - strand at 537.564 kb on + strand at 537.564 kb on + strand at 537.565 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 535,376 - -0.5 535,411 + +0.4 535,653 + ABID97_RS28090 0.26 -0.1 535,653 + ABID97_RS28090 0.26 -0.0 535,776 - ABID97_RS28090 0.43 -0.3 535,776 - ABID97_RS28090 0.43 -0.9 535,870 - ABID97_RS28090 0.56 +0.1 535,870 - ABID97_RS28090 0.56 +0.5 535,870 - ABID97_RS28090 0.56 -1.0 536,119 - +0.2 536,426 + ABID97_RS28095 0.51 -0.5 536,646 + +1.0 536,697 + +0.4 536,698 - -0.2 537,127 + ABID97_RS28100 0.54 -0.2 537,127 + ABID97_RS28100 0.54 -0.1 537,127 + ABID97_RS28100 0.54 -0.3 537,128 - ABID97_RS28100 0.54 -0.7 537,485 + -0.4 537,486 - -0.4 537,564 + -0.2 537,564 + +0.5 537,565 - -0.0
Or see this region's nucleotide sequence