Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27030 and ABID97_RS27035 are separated by 87 nucleotides ABID97_RS27035 and ABID97_RS27040 are separated by 106 nucleotides ABID97_RS27040 and ABID97_RS27045 are separated by 13 nucleotides
ABID97_RS27030: ABID97_RS27030 - tripartite tricarboxylate transporter substrate binding protein, at 324,757 to 325,734
_RS27030
ABID97_RS27035: ABID97_RS27035 - nuclear transport factor 2 family protein, at 325,822 to 326,298
_RS27035
ABID97_RS27040: ABID97_RS27040 - NAD(P)/FAD-dependent oxidoreductase, at 326,405 to 328,012
_RS27040
ABID97_RS27045: ABID97_RS27045 - TauD/TfdA family dioxygenase, at 328,026 to 328,919
_RS27045
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 326.083 kb on + strand, within ABID97_RS27035 at 326.084 kb on - strand, within ABID97_RS27035 at 326.176 kb on + strand, within ABID97_RS27035 at 326.177 kb on - strand, within ABID97_RS27035 at 326.297 kb on - strand at 326.310 kb on + strand at 326.368 kb on - strand at 326.916 kb on + strand, within ABID97_RS27040 at 327.319 kb on - strand, within ABID97_RS27040 at 327.319 kb on - strand, within ABID97_RS27040 at 327.580 kb on - strand, within ABID97_RS27040 at 327.613 kb on - strand, within ABID97_RS27040 at 327.787 kb on - strand, within ABID97_RS27040 at 328.192 kb on + strand, within ABID97_RS27045 at 328.192 kb on + strand, within ABID97_RS27045 at 328.193 kb on - strand, within ABID97_RS27045 at 328.223 kb on - strand, within ABID97_RS27045 at 328.292 kb on - strand, within ABID97_RS27045 at 328.516 kb on + strand, within ABID97_RS27045
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 326,083 + ABID97_RS27035 0.55 -0.3 326,084 - ABID97_RS27035 0.55 -0.4 326,176 + ABID97_RS27035 0.74 -1.0 326,177 - ABID97_RS27035 0.74 -2.3 326,297 - -2.6 326,310 + -0.3 326,368 - -0.5 326,916 + ABID97_RS27040 0.32 +1.8 327,319 - ABID97_RS27040 0.57 -0.3 327,319 - ABID97_RS27040 0.57 -0.4 327,580 - ABID97_RS27040 0.73 +0.2 327,613 - ABID97_RS27040 0.75 +0.8 327,787 - ABID97_RS27040 0.86 -0.1 328,192 + ABID97_RS27045 0.19 +0.1 328,192 + ABID97_RS27045 0.19 -0.0 328,193 - ABID97_RS27045 0.19 +0.4 328,223 - ABID97_RS27045 0.22 +0.4 328,292 - ABID97_RS27045 0.30 -1.2 328,516 + ABID97_RS27045 0.55 -0.8
Or see this region's nucleotide sequence