Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25850 and ABID97_RS25855 are separated by 64 nucleotides ABID97_RS25855 and ABID97_RS25860 are separated by 167 nucleotides
ABID97_RS25850: ABID97_RS25850 - extracellular solute-binding protein, at 89,923 to 91,251
_RS25850
ABID97_RS25855: ABID97_RS25855 - dihydrodipicolinate synthase family protein, at 91,316 to 92,236
_RS25855
ABID97_RS25860: ABID97_RS25860 - LysR family transcriptional regulator, at 92,404 to 93,282
_RS25860
Position (kb) 91
92
93 Strain fitness (log2 ratio) -2
-1
0
1 at 90.323 kb on + strand, within ABID97_RS25850 at 90.396 kb on - strand, within ABID97_RS25850 at 90.443 kb on + strand, within ABID97_RS25850 at 90.446 kb on + strand, within ABID97_RS25850 at 90.446 kb on + strand, within ABID97_RS25850 at 90.627 kb on - strand, within ABID97_RS25850 at 90.780 kb on - strand, within ABID97_RS25850 at 90.782 kb on + strand, within ABID97_RS25850 at 90.783 kb on - strand, within ABID97_RS25850 at 90.881 kb on + strand, within ABID97_RS25850 at 90.881 kb on + strand, within ABID97_RS25850 at 90.881 kb on + strand, within ABID97_RS25850 at 90.902 kb on + strand, within ABID97_RS25850 at 91.266 kb on + strand at 91.267 kb on - strand at 91.821 kb on + strand, within ABID97_RS25855 at 91.873 kb on - strand, within ABID97_RS25855 at 92.737 kb on + strand, within ABID97_RS25860 at 92.738 kb on - strand, within ABID97_RS25860
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 90,323 + ABID97_RS25850 0.30 +0.0 90,396 - ABID97_RS25850 0.36 -0.3 90,443 + ABID97_RS25850 0.39 +0.2 90,446 + ABID97_RS25850 0.39 +0.4 90,446 + ABID97_RS25850 0.39 -0.1 90,627 - ABID97_RS25850 0.53 +0.3 90,780 - ABID97_RS25850 0.64 -0.2 90,782 + ABID97_RS25850 0.65 +0.9 90,783 - ABID97_RS25850 0.65 +0.3 90,881 + ABID97_RS25850 0.72 -0.8 90,881 + ABID97_RS25850 0.72 +0.1 90,881 + ABID97_RS25850 0.72 +0.2 90,902 + ABID97_RS25850 0.74 -1.8 91,266 + -0.5 91,267 - -0.9 91,821 + ABID97_RS25855 0.55 -0.9 91,873 - ABID97_RS25855 0.60 -0.6 92,737 + ABID97_RS25860 0.38 -0.4 92,738 - ABID97_RS25860 0.38 -0.8
Or see this region's nucleotide sequence