Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13530

Experiment: V1_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS13525 and ABID97_RS13530 are separated by 22 nucleotidesABID97_RS13530 and ABID97_RS13535 are separated by 804 nucleotides ABID97_RS13525: ABID97_RS13525 - DUF1302 family protein, at 2,816,147 to 2,817,829 _RS13525 ABID97_RS13530: ABID97_RS13530 - DUF1329 domain-containing protein, at 2,817,852 to 2,819,222 _RS13530 ABID97_RS13535: ABID97_RS13535 - aldehyde dehydrogenase, at 2,820,027 to 2,821,505 _RS13535 Position (kb) 2817 2818 2819 2820Strain fitness (log2 ratio) -1 0 1at 2817.059 kb on + strand, within ABID97_RS13525at 2817.068 kb on + strand, within ABID97_RS13525at 2817.593 kb on + strand, within ABID97_RS13525at 2818.785 kb on + strand, within ABID97_RS13530at 2818.786 kb on - strand, within ABID97_RS13530at 2818.953 kb on + strand, within ABID97_RS13530at 2819.054 kb on + strand, within ABID97_RS13530at 2819.088 kb on + strandat 2819.110 kb on - strandat 2819.835 kb on - strandat 2820.105 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
remove
2,817,059 + ABID97_RS13525 0.54 +1.0
2,817,068 + ABID97_RS13525 0.55 -0.1
2,817,593 + ABID97_RS13525 0.86 +0.9
2,818,785 + ABID97_RS13530 0.68 -1.3
2,818,786 - ABID97_RS13530 0.68 +0.2
2,818,953 + ABID97_RS13530 0.80 +0.2
2,819,054 + ABID97_RS13530 0.88 -0.2
2,819,088 + -1.1
2,819,110 - -0.7
2,819,835 - +1.0
2,820,105 + +0.1

Or see this region's nucleotide sequence