Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05675

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05665 and ABID97_RS05670 are separated by 37 nucleotidesABID97_RS05670 and ABID97_RS05675 overlap by 4 nucleotidesABID97_RS05675 and ABID97_RS05680 are separated by 104 nucleotides ABID97_RS05665: ABID97_RS05665 - dTDP-4-dehydrorhamnose reductase, at 1,191,537 to 1,192,427 _RS05665 ABID97_RS05670: ABID97_RS05670 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,192,465 to 1,193,364 _RS05670 ABID97_RS05675: ABID97_RS05675 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,193,361 to 1,193,909 _RS05675 ABID97_RS05680: ABID97_RS05680 - glycosyltransferase, at 1,194,014 to 1,197,040 _RS05680 Position (kb) 1193 1194Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1192.571 kb on - strand, within ABID97_RS05670at 1192.588 kb on + strand, within ABID97_RS05670at 1192.588 kb on + strand, within ABID97_RS05670at 1192.588 kb on + strand, within ABID97_RS05670at 1192.589 kb on - strand, within ABID97_RS05670at 1192.714 kb on + strand, within ABID97_RS05670at 1192.714 kb on + strand, within ABID97_RS05670at 1192.819 kb on + strand, within ABID97_RS05670at 1192.987 kb on + strand, within ABID97_RS05670at 1192.995 kb on + strand, within ABID97_RS05670at 1193.326 kb on + strandat 1193.327 kb on - strandat 1193.327 kb on - strandat 1193.327 kb on - strandat 1193.327 kb on - strandat 1193.354 kb on + strandat 1193.354 kb on + strandat 1193.355 kb on - strandat 1193.979 kb on + strandat 1193.980 kb on - strandat 1194.065 kb on + strandat 1194.065 kb on + strandat 1194.065 kb on + strandat 1194.065 kb on + strandat 1194.065 kb on + strandat 1194.065 kb on + strandat 1194.065 kb on + strandat 1194.066 kb on - strandat 1194.066 kb on - strandat 1194.066 kb on - strandat 1194.066 kb on - strandat 1194.066 kb on - strandat 1194.084 kb on + strandat 1194.084 kb on + strandat 1194.084 kb on + strandat 1194.084 kb on + strandat 1194.085 kb on - strandat 1194.085 kb on - strandat 1194.085 kb on - strandat 1194.085 kb on - strandat 1194.088 kb on + strandat 1194.088 kb on + strandat 1194.089 kb on - strandat 1194.089 kb on - strandat 1194.350 kb on + strand, within ABID97_RS05680at 1194.351 kb on - strand, within ABID97_RS05680at 1194.371 kb on + strand, within ABID97_RS05680at 1194.371 kb on + strand, within ABID97_RS05680at 1194.371 kb on + strand, within ABID97_RS05680at 1194.371 kb on + strand, within ABID97_RS05680at 1194.371 kb on + strand, within ABID97_RS05680at 1194.372 kb on - strand, within ABID97_RS05680at 1194.372 kb on - strand, within ABID97_RS05680at 1194.401 kb on + strand, within ABID97_RS05680at 1194.401 kb on + strand, within ABID97_RS05680at 1194.401 kb on + strand, within ABID97_RS05680at 1194.404 kb on + strand, within ABID97_RS05680at 1194.404 kb on + strand, within ABID97_RS05680at 1194.405 kb on - strand, within ABID97_RS05680at 1194.405 kb on - strand, within ABID97_RS05680at 1194.405 kb on - strand, within ABID97_RS05680at 1194.416 kb on + strand, within ABID97_RS05680at 1194.482 kb on + strand, within ABID97_RS05680at 1194.482 kb on + strand, within ABID97_RS05680at 1194.483 kb on - strand, within ABID97_RS05680at 1194.483 kb on - strand, within ABID97_RS05680at 1194.483 kb on - strand, within ABID97_RS05680at 1194.501 kb on - strand, within ABID97_RS05680at 1194.501 kb on - strand, within ABID97_RS05680at 1194.584 kb on + strand, within ABID97_RS05680at 1194.585 kb on - strand, within ABID97_RS05680at 1194.586 kb on + strand, within ABID97_RS05680at 1194.586 kb on + strand, within ABID97_RS05680at 1194.587 kb on - strand, within ABID97_RS05680at 1194.655 kb on + strand, within ABID97_RS05680at 1194.656 kb on - strand, within ABID97_RS05680at 1194.656 kb on - strand, within ABID97_RS05680at 1194.657 kb on + strand, within ABID97_RS05680at 1194.657 kb on + strand, within ABID97_RS05680at 1194.657 kb on + strand, within ABID97_RS05680at 1194.658 kb on - strand, within ABID97_RS05680at 1194.658 kb on - strand, within ABID97_RS05680at 1194.658 kb on - strand, within ABID97_RS05680at 1194.658 kb on - strand, within ABID97_RS05680at 1194.658 kb on - strand, within ABID97_RS05680at 1194.701 kb on + strand, within ABID97_RS05680at 1194.701 kb on + strand, within ABID97_RS05680at 1194.701 kb on + strand, within ABID97_RS05680at 1194.702 kb on - strand, within ABID97_RS05680at 1194.734 kb on + strand, within ABID97_RS05680at 1194.735 kb on - strand, within ABID97_RS05680at 1194.735 kb on - strand, within ABID97_RS05680at 1194.830 kb on + strand, within ABID97_RS05680at 1194.831 kb on - strand, within ABID97_RS05680at 1194.831 kb on - strand, within ABID97_RS05680at 1194.873 kb on + strand, within ABID97_RS05680at 1194.874 kb on - strand, within ABID97_RS05680at 1194.874 kb on - strand, within ABID97_RS05680at 1194.874 kb on - strand, within ABID97_RS05680at 1194.877 kb on + strand, within ABID97_RS05680at 1194.877 kb on + strand, within ABID97_RS05680at 1194.877 kb on + strand, within ABID97_RS05680at 1194.877 kb on + strand, within ABID97_RS05680at 1194.877 kb on + strand, within ABID97_RS05680at 1194.877 kb on + strand, within ABID97_RS05680at 1194.877 kb on + strand, within ABID97_RS05680at 1194.877 kb on + strand, within ABID97_RS05680at 1194.878 kb on - strand, within ABID97_RS05680at 1194.878 kb on - strand, within ABID97_RS05680at 1194.878 kb on - strand, within ABID97_RS05680at 1194.878 kb on - strand, within ABID97_RS05680at 1194.878 kb on - strand, within ABID97_RS05680at 1194.878 kb on - strand, within ABID97_RS05680

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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1,192,571 - ABID97_RS05670 0.12 -0.7
1,192,588 + ABID97_RS05670 0.14 -1.7
1,192,588 + ABID97_RS05670 0.14 -2.2
1,192,588 + ABID97_RS05670 0.14 -1.7
1,192,589 - ABID97_RS05670 0.14 -1.9
1,192,714 + ABID97_RS05670 0.28 -2.2
1,192,714 + ABID97_RS05670 0.28 -1.4
1,192,819 + ABID97_RS05670 0.39 -1.6
1,192,987 + ABID97_RS05670 0.58 -2.8
1,192,995 + ABID97_RS05670 0.59 +0.6
1,193,326 + -1.3
1,193,327 - -1.7
1,193,327 - -0.3
1,193,327 - -2.7
1,193,327 - -2.0
1,193,354 + +0.3
1,193,354 + +0.2
1,193,355 - -0.2
1,193,979 + -0.2
1,193,980 - -0.2
1,194,065 + -0.8
1,194,065 + -1.5
1,194,065 + +0.5
1,194,065 + -0.1
1,194,065 + -0.7
1,194,065 + -0.0
1,194,065 + +0.4
1,194,066 - -2.5
1,194,066 - -0.2
1,194,066 - -0.2
1,194,066 - +0.9
1,194,066 - +0.4
1,194,084 + +0.0
1,194,084 + -1.2
1,194,084 + -2.3
1,194,084 + +0.3
1,194,085 - -1.0
1,194,085 - -0.2
1,194,085 - +0.2
1,194,085 - +0.4
1,194,088 + -0.2
1,194,088 + -0.2
1,194,089 - +0.2
1,194,089 - +0.2
1,194,350 + ABID97_RS05680 0.11 +0.4
1,194,351 - ABID97_RS05680 0.11 -1.3
1,194,371 + ABID97_RS05680 0.12 -0.1
1,194,371 + ABID97_RS05680 0.12 -2.9
1,194,371 + ABID97_RS05680 0.12 -3.9
1,194,371 + ABID97_RS05680 0.12 -2.0
1,194,371 + ABID97_RS05680 0.12 +0.1
1,194,372 - ABID97_RS05680 0.12 +0.2
1,194,372 - ABID97_RS05680 0.12 +0.1
1,194,401 + ABID97_RS05680 0.13 +0.4
1,194,401 + ABID97_RS05680 0.13 +0.3
1,194,401 + ABID97_RS05680 0.13 -0.8
1,194,404 + ABID97_RS05680 0.13 -0.0
1,194,404 + ABID97_RS05680 0.13 +0.6
1,194,405 - ABID97_RS05680 0.13 +0.2
1,194,405 - ABID97_RS05680 0.13 +0.2
1,194,405 - ABID97_RS05680 0.13 +0.6
1,194,416 + ABID97_RS05680 0.13 +0.1
1,194,482 + ABID97_RS05680 0.15 +0.1
1,194,482 + ABID97_RS05680 0.15 +0.5
1,194,483 - ABID97_RS05680 0.15 +0.7
1,194,483 - ABID97_RS05680 0.15 +0.5
1,194,483 - ABID97_RS05680 0.15 +0.0
1,194,501 - ABID97_RS05680 0.16 +1.1
1,194,501 - ABID97_RS05680 0.16 -0.1
1,194,584 + ABID97_RS05680 0.19 +0.4
1,194,585 - ABID97_RS05680 0.19 +0.2
1,194,586 + ABID97_RS05680 0.19 -0.7
1,194,586 + ABID97_RS05680 0.19 +0.3
1,194,587 - ABID97_RS05680 0.19 +0.4
1,194,655 + ABID97_RS05680 0.21 +0.3
1,194,656 - ABID97_RS05680 0.21 +0.7
1,194,656 - ABID97_RS05680 0.21 -1.9
1,194,657 + ABID97_RS05680 0.21 +0.1
1,194,657 + ABID97_RS05680 0.21 +0.1
1,194,657 + ABID97_RS05680 0.21 -2.9
1,194,658 - ABID97_RS05680 0.21 +0.3
1,194,658 - ABID97_RS05680 0.21 -0.5
1,194,658 - ABID97_RS05680 0.21 -0.7
1,194,658 - ABID97_RS05680 0.21 -0.6
1,194,658 - ABID97_RS05680 0.21 -0.9
1,194,701 + ABID97_RS05680 0.23 +0.9
1,194,701 + ABID97_RS05680 0.23 -0.0
1,194,701 + ABID97_RS05680 0.23 -1.5
1,194,702 - ABID97_RS05680 0.23 +0.2
1,194,734 + ABID97_RS05680 0.24 -0.4
1,194,735 - ABID97_RS05680 0.24 +0.3
1,194,735 - ABID97_RS05680 0.24 +0.4
1,194,830 + ABID97_RS05680 0.27 +2.3
1,194,831 - ABID97_RS05680 0.27 +0.2
1,194,831 - ABID97_RS05680 0.27 -0.2
1,194,873 + ABID97_RS05680 0.28 +0.0
1,194,874 - ABID97_RS05680 0.28 -1.4
1,194,874 - ABID97_RS05680 0.28 -0.2
1,194,874 - ABID97_RS05680 0.28 -0.5
1,194,877 + ABID97_RS05680 0.29 +0.0
1,194,877 + ABID97_RS05680 0.29 +0.2
1,194,877 + ABID97_RS05680 0.29 +0.7
1,194,877 + ABID97_RS05680 0.29 +0.2
1,194,877 + ABID97_RS05680 0.29 +0.4
1,194,877 + ABID97_RS05680 0.29 +0.4
1,194,877 + ABID97_RS05680 0.29 -0.2
1,194,877 + ABID97_RS05680 0.29 -0.4
1,194,878 - ABID97_RS05680 0.29 +0.2
1,194,878 - ABID97_RS05680 0.29 +0.3
1,194,878 - ABID97_RS05680 0.29 +0.2
1,194,878 - ABID97_RS05680 0.29 -0.1
1,194,878 - ABID97_RS05680 0.29 +0.0
1,194,878 - ABID97_RS05680 0.29 -0.1

Or see this region's nucleotide sequence