Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04095 and ABID97_RS04100 are separated by 22 nucleotides ABID97_RS04100 and ABID97_RS04105 are separated by 6 nucleotides
ABID97_RS04095: ABID97_RS04095 - TSUP family transporter, at 840,663 to 841,421
_RS04095
ABID97_RS04100: ABID97_RS04100 - chromate efflux transporter, at 841,444 to 842,790
_RS04100
ABID97_RS04105: ABID97_RS04105 - tripartite tricarboxylate transporter permease, at 842,797 to 844,308
_RS04105
Position (kb) 841
842
843 Strain fitness (log2 ratio) -2
-1
0
1 at 840.474 kb on + strand at 840.552 kb on + strand at 840.680 kb on - strand at 840.680 kb on - strand at 840.798 kb on - strand, within ABID97_RS04095 at 840.801 kb on - strand, within ABID97_RS04095 at 840.999 kb on + strand, within ABID97_RS04095 at 841.000 kb on - strand, within ABID97_RS04095 at 841.138 kb on + strand, within ABID97_RS04095 at 841.269 kb on + strand, within ABID97_RS04095 at 841.270 kb on - strand, within ABID97_RS04095 at 841.420 kb on - strand at 841.504 kb on + strand at 841.505 kb on - strand at 841.627 kb on + strand, within ABID97_RS04100 at 841.627 kb on + strand, within ABID97_RS04100 at 841.627 kb on + strand, within ABID97_RS04100 at 841.627 kb on + strand, within ABID97_RS04100 at 841.627 kb on + strand, within ABID97_RS04100 at 841.627 kb on + strand, within ABID97_RS04100 at 841.627 kb on + strand, within ABID97_RS04100 at 841.672 kb on + strand, within ABID97_RS04100 at 841.672 kb on + strand, within ABID97_RS04100 at 841.672 kb on + strand, within ABID97_RS04100 at 841.672 kb on + strand, within ABID97_RS04100 at 841.672 kb on + strand, within ABID97_RS04100 at 841.673 kb on - strand, within ABID97_RS04100 at 841.673 kb on - strand, within ABID97_RS04100 at 841.673 kb on - strand, within ABID97_RS04100 at 841.772 kb on - strand, within ABID97_RS04100 at 841.781 kb on - strand, within ABID97_RS04100 at 841.984 kb on + strand, within ABID97_RS04100 at 842.275 kb on + strand, within ABID97_RS04100 at 842.276 kb on - strand, within ABID97_RS04100 at 842.302 kb on + strand, within ABID97_RS04100 at 842.302 kb on + strand, within ABID97_RS04100 at 843.137 kb on + strand, within ABID97_RS04105 at 843.137 kb on + strand, within ABID97_RS04105 at 843.137 kb on + strand, within ABID97_RS04105
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 840,474 + -0.4 840,552 + -0.1 840,680 - -0.1 840,680 - -0.2 840,798 - ABID97_RS04095 0.18 -0.5 840,801 - ABID97_RS04095 0.18 -0.4 840,999 + ABID97_RS04095 0.44 -0.2 841,000 - ABID97_RS04095 0.44 -2.1 841,138 + ABID97_RS04095 0.63 -0.0 841,269 + ABID97_RS04095 0.80 -0.1 841,270 - ABID97_RS04095 0.80 -0.2 841,420 - -0.1 841,504 + -0.2 841,505 - +0.1 841,627 + ABID97_RS04100 0.14 -0.5 841,627 + ABID97_RS04100 0.14 +0.1 841,627 + ABID97_RS04100 0.14 -0.2 841,627 + ABID97_RS04100 0.14 -0.5 841,627 + ABID97_RS04100 0.14 -0.7 841,627 + ABID97_RS04100 0.14 -0.4 841,627 + ABID97_RS04100 0.14 -0.1 841,672 + ABID97_RS04100 0.17 -0.5 841,672 + ABID97_RS04100 0.17 -0.3 841,672 + ABID97_RS04100 0.17 -0.4 841,672 + ABID97_RS04100 0.17 +0.1 841,672 + ABID97_RS04100 0.17 -0.2 841,673 - ABID97_RS04100 0.17 -0.3 841,673 - ABID97_RS04100 0.17 -0.2 841,673 - ABID97_RS04100 0.17 -1.2 841,772 - ABID97_RS04100 0.24 -0.3 841,781 - ABID97_RS04100 0.25 +1.0 841,984 + ABID97_RS04100 0.40 +1.1 842,275 + ABID97_RS04100 0.62 +0.1 842,276 - ABID97_RS04100 0.62 -0.4 842,302 + ABID97_RS04100 0.64 -0.7 842,302 + ABID97_RS04100 0.64 +0.4 843,137 + ABID97_RS04105 0.22 -1.1 843,137 + ABID97_RS04105 0.22 -0.6 843,137 + ABID97_RS04105 0.22 -0.2
Or see this region's nucleotide sequence