Strain Fitness in Agrobacterium fabrum C58 around Atu0726

Experiment: R2A with Spectinomycin 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0725 and Atu0726 are separated by 328 nucleotidesAtu0726 and Atu0727 are separated by 157 nucleotides Atu0725: Atu0725 - hypothetical protein, at 725,233 to 725,844 Atu0725 Atu0726: Atu0726 - ring hydroxylating dioxygenase, alpha-subunit, at 726,173 to 727,417 Atu0726 Atu0727: Atu0727 - ferredoxin I, at 727,575 to 728,507 Atu0727 Position (kb) 726 727 728Strain fitness (log2 ratio) -2 -1 0 1 2at 725.174 kb on - strandat 725.259 kb on + strandat 725.372 kb on - strand, within Atu0725at 725.615 kb on - strand, within Atu0725at 725.617 kb on + strand, within Atu0725at 725.703 kb on + strand, within Atu0725at 725.724 kb on + strand, within Atu0725at 725.724 kb on + strand, within Atu0725at 725.779 kb on - strand, within Atu0725at 725.779 kb on - strand, within Atu0725at 725.779 kb on - strand, within Atu0725at 725.779 kb on - strand, within Atu0725at 725.800 kb on - strandat 725.805 kb on - strandat 725.847 kb on - strandat 725.877 kb on + strandat 725.878 kb on + strandat 725.896 kb on - strandat 725.903 kb on + strandat 725.927 kb on + strandat 725.929 kb on + strandat 725.937 kb on - strandat 726.083 kb on + strandat 726.120 kb on - strandat 726.191 kb on + strandat 726.236 kb on - strandat 726.249 kb on - strandat 726.264 kb on - strandat 726.343 kb on + strand, within Atu0726at 726.351 kb on - strand, within Atu0726at 726.363 kb on + strand, within Atu0726at 726.371 kb on - strand, within Atu0726at 726.481 kb on + strand, within Atu0726at 726.512 kb on - strand, within Atu0726at 726.536 kb on + strand, within Atu0726at 726.538 kb on + strand, within Atu0726at 726.538 kb on + strand, within Atu0726at 726.665 kb on + strand, within Atu0726at 726.700 kb on + strand, within Atu0726at 726.744 kb on - strand, within Atu0726at 726.803 kb on - strand, within Atu0726at 726.816 kb on + strand, within Atu0726at 726.881 kb on - strand, within Atu0726at 726.948 kb on - strand, within Atu0726at 727.021 kb on + strand, within Atu0726at 727.105 kb on + strand, within Atu0726at 727.134 kb on + strand, within Atu0726at 727.179 kb on - strand, within Atu0726at 727.300 kb on + strandat 727.305 kb on + strandat 727.378 kb on + strandat 727.393 kb on + strandat 727.394 kb on + strandat 727.399 kb on + strandat 727.459 kb on + strandat 727.554 kb on + strandat 727.557 kb on - strandat 727.631 kb on + strandat 727.631 kb on + strandat 727.633 kb on + strandat 727.633 kb on + strandat 727.633 kb on + strandat 727.633 kb on + strandat 727.641 kb on - strandat 727.641 kb on - strandat 727.641 kb on - strandat 727.645 kb on + strandat 727.651 kb on - strandat 727.653 kb on - strandat 727.653 kb on - strandat 727.736 kb on - strand, within Atu0727at 727.741 kb on + strand, within Atu0727at 727.886 kb on - strand, within Atu0727at 727.946 kb on + strand, within Atu0727at 727.966 kb on + strand, within Atu0727at 728.020 kb on + strand, within Atu0727at 728.033 kb on - strand, within Atu0727at 728.033 kb on - strand, within Atu0727at 728.048 kb on + strand, within Atu0727at 728.056 kb on - strand, within Atu0727at 728.104 kb on + strand, within Atu0727at 728.112 kb on - strand, within Atu0727at 728.244 kb on + strand, within Atu0727at 728.252 kb on - strand, within Atu0727at 728.270 kb on + strand, within Atu0727at 728.307 kb on + strand, within Atu0727at 728.315 kb on - strand, within Atu0727at 728.315 kb on - strand, within Atu0727

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Spectinomycin 0.002 mM
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725,174 - +0.2
725,259 + +0.1
725,372 - Atu0725 0.23 -0.2
725,615 - Atu0725 0.62 +0.9
725,617 + Atu0725 0.63 +0.7
725,703 + Atu0725 0.77 -0.1
725,724 + Atu0725 0.80 -0.5
725,724 + Atu0725 0.80 +0.1
725,779 - Atu0725 0.89 -0.1
725,779 - Atu0725 0.89 -0.5
725,779 - Atu0725 0.89 +0.1
725,779 - Atu0725 0.89 +0.6
725,800 - +0.3
725,805 - +0.4
725,847 - -0.7
725,877 + -0.1
725,878 + -0.5
725,896 - +0.2
725,903 + +0.5
725,927 + +0.4
725,929 + +0.5
725,937 - -0.0
726,083 + -0.1
726,120 - -0.3
726,191 + -0.5
726,236 - -1.8
726,249 - -0.1
726,264 - +0.2
726,343 + Atu0726 0.14 -0.9
726,351 - Atu0726 0.14 -0.7
726,363 + Atu0726 0.15 +0.7
726,371 - Atu0726 0.16 -0.7
726,481 + Atu0726 0.25 +0.4
726,512 - Atu0726 0.27 -0.3
726,536 + Atu0726 0.29 -1.2
726,538 + Atu0726 0.29 -0.7
726,538 + Atu0726 0.29 -0.5
726,665 + Atu0726 0.40 -1.1
726,700 + Atu0726 0.42 +0.5
726,744 - Atu0726 0.46 -0.6
726,803 - Atu0726 0.51 -1.0
726,816 + Atu0726 0.52 -1.2
726,881 - Atu0726 0.57 -0.9
726,948 - Atu0726 0.62 -1.0
727,021 + Atu0726 0.68 -0.9
727,105 + Atu0726 0.75 -0.6
727,134 + Atu0726 0.77 -0.5
727,179 - Atu0726 0.81 -0.5
727,300 + -0.4
727,305 + -1.1
727,378 + -0.0
727,393 + +1.8
727,394 + -0.8
727,399 + +0.1
727,459 + -1.2
727,554 + -0.3
727,557 - -0.1
727,631 + -0.6
727,631 + +0.1
727,633 + -0.7
727,633 + +0.6
727,633 + -0.6
727,633 + +0.5
727,641 - -1.0
727,641 - -0.6
727,641 - -0.1
727,645 + -0.4
727,651 - -1.1
727,653 - -0.2
727,653 - -0.3
727,736 - Atu0727 0.17 -0.7
727,741 + Atu0727 0.18 -0.9
727,886 - Atu0727 0.33 -0.8
727,946 + Atu0727 0.40 -0.9
727,966 + Atu0727 0.42 -0.9
728,020 + Atu0727 0.48 +0.2
728,033 - Atu0727 0.49 +0.2
728,033 - Atu0727 0.49 -0.1
728,048 + Atu0727 0.51 -0.6
728,056 - Atu0727 0.52 -0.8
728,104 + Atu0727 0.57 -0.4
728,112 - Atu0727 0.58 -1.0
728,244 + Atu0727 0.72 -0.1
728,252 - Atu0727 0.73 -1.0
728,270 + Atu0727 0.74 -0.5
728,307 + Atu0727 0.78 -0.9
728,315 - Atu0727 0.79 -0.8
728,315 - Atu0727 0.79 -0.8

Or see this region's nucleotide sequence