Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26285

Experiment: V1_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26280 and ABID97_RS26285 are separated by 70 nucleotidesABID97_RS26285 and ABID97_RS26290 are separated by 188 nucleotides ABID97_RS26280: ABID97_RS26280 - zinc-dependent alcohol dehydrogenase family protein, at 180,059 to 181,081 _RS26280 ABID97_RS26285: ABID97_RS26285 - response regulator transcription factor, at 181,152 to 181,784 _RS26285 ABID97_RS26290: ABID97_RS26290 - LysR substrate-binding domain-containing protein, at 181,973 to 182,860 _RS26290 Position (kb) 181 182Strain fitness (log2 ratio) -1 0 1at 180.549 kb on + strand, within ABID97_RS26280at 180.549 kb on + strand, within ABID97_RS26280at 180.684 kb on - strand, within ABID97_RS26280at 180.811 kb on - strand, within ABID97_RS26280at 181.085 kb on + strandat 181.460 kb on - strand, within ABID97_RS26285at 181.556 kb on - strand, within ABID97_RS26285at 181.556 kb on - strand, within ABID97_RS26285at 181.746 kb on + strandat 182.306 kb on - strand, within ABID97_RS26290at 182.452 kb on - strand, within ABID97_RS26290

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_1
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180,549 + ABID97_RS26280 0.48 +0.4
180,549 + ABID97_RS26280 0.48 +0.3
180,684 - ABID97_RS26280 0.61 -0.1
180,811 - ABID97_RS26280 0.74 -0.2
181,085 + -0.0
181,460 - ABID97_RS26285 0.49 -0.4
181,556 - ABID97_RS26285 0.64 -0.4
181,556 - ABID97_RS26285 0.64 -1.7
181,746 + +0.5
182,306 - ABID97_RS26290 0.38 +0.8
182,452 - ABID97_RS26290 0.54 -0.7

Or see this region's nucleotide sequence