Experiment: V1_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22300 and ABID97_RS22305 are separated by 72 nucleotides ABID97_RS22305 and ABID97_RS22310 overlap by 1 nucleotides
ABID97_RS22300: ABID97_RS22300 - carotenoid oxygenase family protein, at 4,620,226 to 4,621,722
_RS22300
ABID97_RS22305: ABID97_RS22305 - AzlD domain-containing protein, at 4,621,795 to 4,622,124
_RS22305
ABID97_RS22310: ABID97_RS22310 - AzlC family ABC transporter permease, at 4,622,124 to 4,622,819
_RS22310
Position (kb)
4621
4622
4623 Strain fitness (log2 ratio)
-2
-1
0
1 at 4621.513 kb on + strand, within ABID97_RS22300 at 4621.513 kb on + strand, within ABID97_RS22300 at 4621.678 kb on + strand at 4621.806 kb on - strand at 4621.874 kb on + strand, within ABID97_RS22305 at 4621.874 kb on + strand, within ABID97_RS22305 at 4621.874 kb on + strand, within ABID97_RS22305 at 4621.875 kb on - strand, within ABID97_RS22305 at 4621.875 kb on - strand, within ABID97_RS22305 at 4622.202 kb on + strand, within ABID97_RS22310 at 4622.265 kb on + strand, within ABID97_RS22310 at 4622.266 kb on - strand, within ABID97_RS22310 at 4622.481 kb on + strand, within ABID97_RS22310 at 4622.503 kb on - strand, within ABID97_RS22310 at 4622.518 kb on + strand, within ABID97_RS22310 at 4622.518 kb on + strand, within ABID97_RS22310 at 4622.518 kb on + strand, within ABID97_RS22310 at 4622.519 kb on - strand, within ABID97_RS22310 at 4622.519 kb on - strand, within ABID97_RS22310 at 4622.570 kb on - strand, within ABID97_RS22310 at 4622.762 kb on - strand at 4622.851 kb on + strand at 4622.852 kb on - strand at 4622.857 kb on + strand at 4622.886 kb on - strand at 4622.906 kb on + strand at 4622.907 kb on - strand at 4622.908 kb on + strand at 4622.908 kb on + strand at 4622.908 kb on + strand at 4622.908 kb on + strand at 4622.909 kb on - strand at 4622.909 kb on - strand at 4622.909 kb on - strand at 4622.909 kb on - strand at 4622.909 kb on - strand at 4623.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_1 remove 4,621,513 + ABID97_RS22300 0.86 -2.3 4,621,513 + ABID97_RS22300 0.86 -1.5 4,621,678 + -0.6 4,621,806 - +0.3 4,621,874 + ABID97_RS22305 0.24 -1.7 4,621,874 + ABID97_RS22305 0.24 -1.9 4,621,874 + ABID97_RS22305 0.24 -0.4 4,621,875 - ABID97_RS22305 0.24 -0.2 4,621,875 - ABID97_RS22305 0.24 +0.7 4,622,202 + ABID97_RS22310 0.11 +0.2 4,622,265 + ABID97_RS22310 0.20 -0.1 4,622,266 - ABID97_RS22310 0.20 -0.2 4,622,481 + ABID97_RS22310 0.51 -0.7 4,622,503 - ABID97_RS22310 0.54 -0.4 4,622,518 + ABID97_RS22310 0.57 -0.9 4,622,518 + ABID97_RS22310 0.57 -1.3 4,622,518 + ABID97_RS22310 0.57 -0.8 4,622,519 - ABID97_RS22310 0.57 -0.5 4,622,519 - ABID97_RS22310 0.57 -0.5 4,622,570 - ABID97_RS22310 0.64 -1.7 4,622,762 - -0.3 4,622,851 + +0.5 4,622,852 - +0.9 4,622,857 + -0.3 4,622,886 - -0.3 4,622,906 + -0.5 4,622,907 - -0.4 4,622,908 + +0.5 4,622,908 + +0.7 4,622,908 + -0.0 4,622,908 + +0.1 4,622,909 - +0.1 4,622,909 - +0.1 4,622,909 - +0.2 4,622,909 - -1.0 4,622,909 - -1.6 4,623,107 - -0.2
Or see this region's nucleotide sequence