Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18955

Experiment: V1_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18950 and ABID97_RS18955 are separated by 551 nucleotidesABID97_RS18955 and ABID97_RS18960 overlap by 4 nucleotides ABID97_RS18950: ABID97_RS18950 - ABC transporter ATP-binding protein, at 3,902,314 to 3,903,141 _RS18950 ABID97_RS18955: ABID97_RS18955 - branched-chain amino acid ABC transporter permease, at 3,903,693 to 3,904,724 _RS18955 ABID97_RS18960: ABID97_RS18960 - branched-chain amino acid ABC transporter permease, at 3,904,721 to 3,905,614 _RS18960 Position (kb) 3903 3904 3905Strain fitness (log2 ratio) -1 0 1at 3903.319 kb on - strandat 3903.438 kb on + strandat 3903.438 kb on + strandat 3903.438 kb on + strandat 3903.438 kb on + strandat 3903.439 kb on - strandat 3903.944 kb on - strand, within ABID97_RS18955at 3904.118 kb on - strand, within ABID97_RS18955at 3904.641 kb on + strandat 3904.705 kb on + strandat 3904.808 kb on + strandat 3905.133 kb on + strand, within ABID97_RS18960at 3905.467 kb on - strand, within ABID97_RS18960at 3905.568 kb on + strandat 3905.718 kb on - strandat 3905.718 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction V1_1
remove
3,903,319 - -0.5
3,903,438 + -0.0
3,903,438 + +0.4
3,903,438 + -0.3
3,903,438 + -0.7
3,903,439 - -0.3
3,903,944 - ABID97_RS18955 0.24 -0.3
3,904,118 - ABID97_RS18955 0.41 -0.4
3,904,641 + -0.2
3,904,705 + -0.1
3,904,808 + -0.4
3,905,133 + ABID97_RS18960 0.46 +0.5
3,905,467 - ABID97_RS18960 0.83 -0.1
3,905,568 + -0.0
3,905,718 - +0.9
3,905,718 - +0.2

Or see this region's nucleotide sequence