Experiment: V1_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13505 and ABID97_RS13510 are separated by 11 nucleotides ABID97_RS13510 and ABID97_RS13515 overlap by 4 nucleotides
ABID97_RS13505: ABID97_RS13505 - ornithine cyclodeaminase family protein, at 2,809,745 to 2,810,788
_RS13505
ABID97_RS13510: ABID97_RS13510 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,810,800 to 2,812,275
_RS13510
ABID97_RS13515: ABID97_RS13515 - MMPL family transporter, at 2,812,272 to 2,814,680
_RS13515
Position (kb)
2810
2811
2812
2813 Strain fitness (log2 ratio)
-2
-1
0
1 at 2809.868 kb on + strand, within ABID97_RS13505 at 2809.979 kb on + strand, within ABID97_RS13505 at 2809.979 kb on + strand, within ABID97_RS13505 at 2810.206 kb on + strand, within ABID97_RS13505 at 2810.206 kb on + strand, within ABID97_RS13505 at 2810.207 kb on - strand, within ABID97_RS13505 at 2810.666 kb on + strand, within ABID97_RS13505 at 2810.887 kb on + strand at 2811.043 kb on + strand, within ABID97_RS13510 at 2812.057 kb on + strand, within ABID97_RS13510 at 2812.585 kb on + strand, within ABID97_RS13515 at 2812.586 kb on - strand, within ABID97_RS13515 at 2812.953 kb on + strand, within ABID97_RS13515 at 2812.957 kb on + strand, within ABID97_RS13515 at 2812.958 kb on - strand, within ABID97_RS13515 at 2813.112 kb on - strand, within ABID97_RS13515
Per-strain Table
Position Strand Gene LocusTag Fraction V1_1 remove 2,809,868 + ABID97_RS13505 0.12 +1.1 2,809,979 + ABID97_RS13505 0.22 -0.4 2,809,979 + ABID97_RS13505 0.22 -1.5 2,810,206 + ABID97_RS13505 0.44 -1.0 2,810,206 + ABID97_RS13505 0.44 +1.1 2,810,207 - ABID97_RS13505 0.44 -0.2 2,810,666 + ABID97_RS13505 0.88 -0.0 2,810,887 + +0.5 2,811,043 + ABID97_RS13510 0.16 +1.1 2,812,057 + ABID97_RS13510 0.85 +0.2 2,812,585 + ABID97_RS13515 0.13 -2.0 2,812,586 - ABID97_RS13515 0.13 -0.3 2,812,953 + ABID97_RS13515 0.28 +0.1 2,812,957 + ABID97_RS13515 0.28 -0.1 2,812,958 - ABID97_RS13515 0.28 -0.3 2,813,112 - ABID97_RS13515 0.35 -0.6
Or see this region's nucleotide sequence