Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07265

Experiment: V1_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS07260 and ABID97_RS07265 are separated by 48 nucleotidesABID97_RS07265 and ABID97_RS07270 overlap by 4 nucleotides ABID97_RS07260: ABID97_RS07260 - TIM44-like domain-containing protein, at 1,540,344 to 1,541,369 _RS07260 ABID97_RS07265: ABID97_RS07265 - hypothetical protein, at 1,541,418 to 1,541,987 _RS07265 ABID97_RS07270: ABID97_RS07270 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 1,541,984 to 1,543,549 _RS07270 Position (kb) 1541 1542Strain fitness (log2 ratio) -1 0 1at 1540.804 kb on - strand, within ABID97_RS07260at 1540.804 kb on - strand, within ABID97_RS07260at 1541.226 kb on + strand, within ABID97_RS07260at 1541.226 kb on + strand, within ABID97_RS07260at 1541.226 kb on + strand, within ABID97_RS07260at 1541.227 kb on - strand, within ABID97_RS07260at 1541.227 kb on - strand, within ABID97_RS07260at 1541.227 kb on - strand, within ABID97_RS07260at 1541.227 kb on - strand, within ABID97_RS07260at 1541.367 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_1
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1,540,804 - ABID97_RS07260 0.45 -0.2
1,540,804 - ABID97_RS07260 0.45 -0.1
1,541,226 + ABID97_RS07260 0.86 +0.2
1,541,226 + ABID97_RS07260 0.86 -0.4
1,541,226 + ABID97_RS07260 0.86 +1.6
1,541,227 - ABID97_RS07260 0.86 -1.4
1,541,227 - ABID97_RS07260 0.86 +0.4
1,541,227 - ABID97_RS07260 0.86 +0.1
1,541,227 - ABID97_RS07260 0.86 -0.3
1,541,367 + -0.0

Or see this region's nucleotide sequence