Experiment: R2A with Tetracycline 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3614 and Atu3615 are separated by 11 nucleotides Atu3615 and Atu3616 are separated by 108 nucleotides Atu3616 and Atu3617 are separated by 252 nucleotides Atu3617 and Atu3618 are separated by 165 nucleotides
Atu3614: Atu3614 - glyoxalase II, at 669,626 to 670,396
Atu3614
Atu3615: Atu3615 - hypothetical protein, at 670,408 to 670,836
Atu3615
Atu3616: Atu3616 - hypothetical protein, at 670,945 to 671,718
Atu3616
Atu3617: Atu3617 - 50S ribosomal protein L28, at 671,971 to 672,261
Atu3617
Atu3618: Atu3618 - hypothetical protein, at 672,427 to 673,065
Atu3618
Position (kb) 670
671
672 Strain fitness (log2 ratio) -1
0
1
2
3 at 669.977 kb on + strand, within Atu3614 at 670.007 kb on + strand, within Atu3614 at 670.081 kb on + strand, within Atu3614 at 670.089 kb on - strand, within Atu3614 at 670.126 kb on + strand, within Atu3614 at 670.126 kb on + strand, within Atu3614 at 670.186 kb on + strand, within Atu3614 at 670.194 kb on - strand, within Atu3614 at 670.199 kb on - strand, within Atu3614 at 670.199 kb on - strand, within Atu3614 at 670.219 kb on + strand, within Atu3614 at 670.439 kb on + strand at 670.601 kb on - strand, within Atu3615 at 670.637 kb on + strand, within Atu3615 at 670.637 kb on + strand, within Atu3615 at 670.645 kb on + strand, within Atu3615 at 670.645 kb on - strand, within Atu3615 at 670.645 kb on - strand, within Atu3615 at 670.652 kb on + strand, within Atu3615 at 670.653 kb on - strand, within Atu3615 at 670.653 kb on - strand, within Atu3615 at 670.660 kb on - strand, within Atu3615 at 670.660 kb on - strand, within Atu3615 at 670.838 kb on + strand at 670.856 kb on - strand at 670.978 kb on - strand at 670.979 kb on + strand at 671.292 kb on - strand, within Atu3616 at 671.338 kb on + strand, within Atu3616 at 671.341 kb on - strand, within Atu3616 at 671.346 kb on - strand, within Atu3616 at 671.346 kb on - strand, within Atu3616 at 671.394 kb on + strand, within Atu3616 at 671.479 kb on - strand, within Atu3616 at 671.536 kb on - strand, within Atu3616 at 671.622 kb on + strand, within Atu3616 at 671.629 kb on + strand, within Atu3616 at 671.737 kb on - strand at 672.313 kb on + strand at 672.547 kb on + strand, within Atu3618 at 672.547 kb on + strand, within Atu3618 at 672.555 kb on - strand, within Atu3618 at 672.562 kb on + strand, within Atu3618
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM remove 669,977 + Atu3614 0.46 +1.0 670,007 + Atu3614 0.49 -0.1 670,081 + Atu3614 0.59 +0.7 670,089 - Atu3614 0.60 +0.3 670,126 + Atu3614 0.65 +1.2 670,126 + Atu3614 0.65 -0.6 670,186 + Atu3614 0.73 -0.2 670,194 - Atu3614 0.74 +0.2 670,199 - Atu3614 0.74 +0.9 670,199 - Atu3614 0.74 +0.5 670,219 + Atu3614 0.77 -0.2 670,439 + -0.0 670,601 - Atu3615 0.45 +1.2 670,637 + Atu3615 0.53 -0.0 670,637 + Atu3615 0.53 +0.2 670,645 + Atu3615 0.55 +3.0 670,645 - Atu3615 0.55 +0.7 670,645 - Atu3615 0.55 +1.6 670,652 + Atu3615 0.57 -0.7 670,653 - Atu3615 0.57 -0.2 670,653 - Atu3615 0.57 -0.0 670,660 - Atu3615 0.59 +1.0 670,660 - Atu3615 0.59 -0.4 670,838 + +0.8 670,856 - +1.2 670,978 - -1.4 670,979 + -0.2 671,292 - Atu3616 0.45 +0.6 671,338 + Atu3616 0.51 -0.3 671,341 - Atu3616 0.51 +0.6 671,346 - Atu3616 0.52 -0.4 671,346 - Atu3616 0.52 -1.2 671,394 + Atu3616 0.58 -0.6 671,479 - Atu3616 0.69 -0.9 671,536 - Atu3616 0.76 -0.5 671,622 + Atu3616 0.87 +0.2 671,629 + Atu3616 0.88 -0.4 671,737 - -0.0 672,313 + +2.1 672,547 + Atu3618 0.19 -1.0 672,547 + Atu3618 0.19 +0.7 672,555 - Atu3618 0.20 +0.9 672,562 + Atu3618 0.21 -0.6
Or see this region's nucleotide sequence