Strain Fitness in Agrobacterium fabrum C58 around Atu2243

Experiment: R2A with Tetracycline 0.002 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2242 and Atu2243 are separated by 379 nucleotidesAtu2243 and Atu2244 are separated by 235 nucleotidesAtu2244 and Atu2245 are separated by 173 nucleotides Atu2242: Atu2242 - ABC transporter, nucleotide binding/ATPase protein, at 2,213,869 to 2,215,719 Atu2242 Atu2243: Atu2243 - hypothetical protein, at 2,216,099 to 2,216,974 Atu2243 Atu2244: Atu2244 - tRNA/rRNA methyltransferase, at 2,217,210 to 2,217,695 Atu2244 Atu2245: Atu2245 - Na+/Pi-cotransporter, at 2,217,869 to 2,219,521 Atu2245 Position (kb) 2216 2217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2215.127 kb on - strand, within Atu2242at 2215.190 kb on + strand, within Atu2242at 2215.198 kb on - strand, within Atu2242at 2215.415 kb on + strand, within Atu2242at 2215.430 kb on + strand, within Atu2242at 2215.444 kb on + strand, within Atu2242at 2215.488 kb on - strand, within Atu2242at 2215.577 kb on + strandat 2215.720 kb on + strandat 2215.766 kb on - strandat 2215.778 kb on + strandat 2215.812 kb on - strandat 2215.869 kb on + strandat 2215.883 kb on - strandat 2216.086 kb on + strandat 2216.099 kb on - strandat 2216.104 kb on - strandat 2216.104 kb on - strandat 2216.127 kb on + strandat 2216.137 kb on - strandat 2216.144 kb on + strandat 2216.154 kb on - strandat 2216.218 kb on - strand, within Atu2243at 2216.230 kb on + strand, within Atu2243at 2216.236 kb on - strand, within Atu2243at 2216.261 kb on + strand, within Atu2243at 2216.281 kb on + strand, within Atu2243at 2216.368 kb on + strand, within Atu2243at 2216.377 kb on - strand, within Atu2243at 2216.393 kb on + strand, within Atu2243at 2216.395 kb on - strand, within Atu2243at 2216.433 kb on - strand, within Atu2243at 2216.460 kb on + strand, within Atu2243at 2216.583 kb on + strand, within Atu2243at 2216.601 kb on + strand, within Atu2243at 2216.653 kb on - strand, within Atu2243at 2216.688 kb on + strand, within Atu2243at 2216.739 kb on - strand, within Atu2243at 2216.757 kb on + strand, within Atu2243at 2216.804 kb on + strand, within Atu2243at 2216.812 kb on - strand, within Atu2243at 2216.822 kb on - strand, within Atu2243at 2216.850 kb on + strand, within Atu2243at 2216.850 kb on + strand, within Atu2243at 2216.850 kb on + strand, within Atu2243at 2216.850 kb on + strand, within Atu2243at 2216.850 kb on + strand, within Atu2243at 2216.850 kb on + strand, within Atu2243at 2216.851 kb on + strand, within Atu2243at 2216.851 kb on + strand, within Atu2243at 2216.858 kb on - strand, within Atu2243at 2216.858 kb on - strand, within Atu2243at 2216.912 kb on - strandat 2216.942 kb on + strandat 2217.029 kb on - strandat 2217.031 kb on + strandat 2217.031 kb on + strandat 2217.039 kb on - strandat 2217.039 kb on - strandat 2217.039 kb on - strandat 2217.054 kb on + strandat 2217.209 kb on - strandat 2217.220 kb on - strandat 2217.224 kb on + strandat 2217.224 kb on + strandat 2217.232 kb on - strandat 2217.232 kb on - strandat 2217.300 kb on - strand, within Atu2244at 2217.310 kb on + strand, within Atu2244at 2217.310 kb on + strand, within Atu2244at 2217.386 kb on + strand, within Atu2244at 2217.394 kb on - strand, within Atu2244at 2217.492 kb on + strand, within Atu2244at 2217.492 kb on + strand, within Atu2244at 2217.495 kb on - strand, within Atu2244at 2217.505 kb on - strand, within Atu2244at 2217.553 kb on + strand, within Atu2244at 2217.578 kb on + strand, within Atu2244at 2217.682 kb on + strandat 2217.688 kb on + strandat 2217.830 kb on + strandat 2217.830 kb on + strandat 2217.838 kb on - strandat 2217.838 kb on - strandat 2217.838 kb on - strandat 2217.838 kb on - strandat 2217.838 kb on - strandat 2217.906 kb on - strandat 2217.914 kb on - strandat 2217.937 kb on + strandat 2217.954 kb on + strandat 2217.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM
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2,215,127 - Atu2242 0.68 -4.1
2,215,190 + Atu2242 0.71 -3.0
2,215,198 - Atu2242 0.72 -1.2
2,215,415 + Atu2242 0.84 -2.7
2,215,430 + Atu2242 0.84 -0.4
2,215,444 + Atu2242 0.85 +0.1
2,215,488 - Atu2242 0.87 -1.5
2,215,577 + -1.4
2,215,720 + +0.2
2,215,766 - -1.6
2,215,778 + +1.1
2,215,812 - +0.8
2,215,869 + -1.7
2,215,883 - -0.3
2,216,086 + -0.9
2,216,099 - +0.9
2,216,104 - +0.3
2,216,104 - +0.7
2,216,127 + +0.1
2,216,137 - -0.1
2,216,144 + -1.5
2,216,154 - +0.5
2,216,218 - Atu2243 0.14 +0.4
2,216,230 + Atu2243 0.15 +0.8
2,216,236 - Atu2243 0.16 -0.4
2,216,261 + Atu2243 0.18 +0.1
2,216,281 + Atu2243 0.21 +0.0
2,216,368 + Atu2243 0.31 -1.5
2,216,377 - Atu2243 0.32 -0.1
2,216,393 + Atu2243 0.34 -0.4
2,216,395 - Atu2243 0.34 +0.5
2,216,433 - Atu2243 0.38 +0.9
2,216,460 + Atu2243 0.41 -0.4
2,216,583 + Atu2243 0.55 +1.2
2,216,601 + Atu2243 0.57 -0.5
2,216,653 - Atu2243 0.63 +0.8
2,216,688 + Atu2243 0.67 +1.1
2,216,739 - Atu2243 0.73 -0.6
2,216,757 + Atu2243 0.75 +1.3
2,216,804 + Atu2243 0.80 -0.2
2,216,812 - Atu2243 0.81 -0.7
2,216,822 - Atu2243 0.83 -0.3
2,216,850 + Atu2243 0.86 +0.1
2,216,850 + Atu2243 0.86 -0.7
2,216,850 + Atu2243 0.86 +0.6
2,216,850 + Atu2243 0.86 +1.6
2,216,850 + Atu2243 0.86 +0.4
2,216,850 + Atu2243 0.86 +1.3
2,216,851 + Atu2243 0.86 +0.7
2,216,851 + Atu2243 0.86 -0.6
2,216,858 - Atu2243 0.87 +0.9
2,216,858 - Atu2243 0.87 +1.4
2,216,912 - -1.0
2,216,942 + +0.2
2,217,029 - +1.1
2,217,031 + -0.4
2,217,031 + -1.0
2,217,039 - -0.3
2,217,039 - -0.1
2,217,039 - +1.2
2,217,054 + -1.7
2,217,209 - +0.9
2,217,220 - +0.2
2,217,224 + -0.2
2,217,224 + +0.1
2,217,232 - -0.0
2,217,232 - +0.0
2,217,300 - Atu2244 0.19 -0.1
2,217,310 + Atu2244 0.21 +0.2
2,217,310 + Atu2244 0.21 +1.4
2,217,386 + Atu2244 0.36 -0.3
2,217,394 - Atu2244 0.38 +0.6
2,217,492 + Atu2244 0.58 +0.5
2,217,492 + Atu2244 0.58 -0.8
2,217,495 - Atu2244 0.59 -2.1
2,217,505 - Atu2244 0.61 +0.6
2,217,553 + Atu2244 0.71 +0.3
2,217,578 + Atu2244 0.76 -1.5
2,217,682 + -0.6
2,217,688 + +2.0
2,217,830 + -0.2
2,217,830 + -0.2
2,217,838 - +0.8
2,217,838 - +1.6
2,217,838 - -0.6
2,217,838 - +1.0
2,217,838 - -1.3
2,217,906 - +1.8
2,217,914 - +0.0
2,217,937 + +0.0
2,217,954 + -0.0
2,217,966 + +0.4

Or see this region's nucleotide sequence