Experiment: R2A with Tetracycline 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0718 and Atu0719 are separated by 159 nucleotides Atu0719 and Atu0720 are separated by 64 nucleotides Atu0720 and Atu0721 are separated by 331 nucleotides
Atu0718: Atu0718 - hypothetical protein, at 718,423 to 718,884
Atu0718
Atu0719: Atu0719 - transacetylase, at 719,044 to 719,679
Atu0719
Atu0720: Atu0720 - ribonuclease HII, at 719,744 to 720,397
Atu0720
Atu0721: Atu0721 - hypothetical protein, at 720,729 to 721,838
Atu0721
Position (kb) 719
720
721 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 718.799 kb on - strand, within Atu0718 at 718.877 kb on - strand at 718.960 kb on - strand at 718.995 kb on + strand at 719.136 kb on - strand, within Atu0719 at 719.196 kb on - strand, within Atu0719 at 719.208 kb on - strand, within Atu0719 at 719.221 kb on - strand, within Atu0719 at 719.248 kb on - strand, within Atu0719 at 719.460 kb on + strand, within Atu0719 at 719.487 kb on - strand, within Atu0719 at 719.500 kb on + strand, within Atu0719 at 719.508 kb on - strand, within Atu0719 at 719.518 kb on - strand, within Atu0719 at 719.556 kb on + strand, within Atu0719 at 719.606 kb on - strand, within Atu0719 at 719.728 kb on - strand at 719.784 kb on + strand at 719.854 kb on + strand, within Atu0720 at 719.854 kb on + strand, within Atu0720 at 719.861 kb on + strand, within Atu0720 at 719.862 kb on - strand, within Atu0720 at 719.869 kb on - strand, within Atu0720 at 719.869 kb on - strand, within Atu0720 at 720.013 kb on + strand, within Atu0720 at 720.021 kb on - strand, within Atu0720 at 720.056 kb on - strand, within Atu0720 at 720.068 kb on - strand, within Atu0720 at 720.294 kb on + strand, within Atu0720 at 720.407 kb on + strand at 720.515 kb on - strand at 720.591 kb on + strand at 720.604 kb on - strand at 720.898 kb on + strand, within Atu0721 at 720.898 kb on + strand, within Atu0721 at 720.917 kb on - strand, within Atu0721 at 720.930 kb on - strand, within Atu0721 at 721.056 kb on - strand, within Atu0721 at 721.190 kb on + strand, within Atu0721 at 721.190 kb on + strand, within Atu0721 at 721.198 kb on - strand, within Atu0721 at 721.248 kb on - strand, within Atu0721 at 721.333 kb on + strand, within Atu0721 at 721.333 kb on + strand, within Atu0721 at 721.336 kb on - strand, within Atu0721
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM remove 718,799 - Atu0718 0.81 -2.2 718,877 - +0.8 718,960 - +0.8 718,995 + -1.3 719,136 - Atu0719 0.14 -0.3 719,196 - Atu0719 0.24 +0.2 719,208 - Atu0719 0.26 -0.7 719,221 - Atu0719 0.28 -1.0 719,248 - Atu0719 0.32 -0.5 719,460 + Atu0719 0.65 -0.5 719,487 - Atu0719 0.70 +1.8 719,500 + Atu0719 0.72 +3.1 719,508 - Atu0719 0.73 -0.9 719,518 - Atu0719 0.75 +0.1 719,556 + Atu0719 0.81 +0.6 719,606 - Atu0719 0.88 +0.7 719,728 - -0.1 719,784 + +0.4 719,854 + Atu0720 0.17 -1.0 719,854 + Atu0720 0.17 +0.2 719,861 + Atu0720 0.18 -0.2 719,862 - Atu0720 0.18 -1.2 719,869 - Atu0720 0.19 +0.1 719,869 - Atu0720 0.19 -0.4 720,013 + Atu0720 0.41 -0.3 720,021 - Atu0720 0.42 -0.5 720,056 - Atu0720 0.48 +0.5 720,068 - Atu0720 0.50 -0.2 720,294 + Atu0720 0.84 -2.0 720,407 + +0.0 720,515 - -0.8 720,591 + -0.2 720,604 - +0.0 720,898 + Atu0721 0.15 -0.5 720,898 + Atu0721 0.15 -0.3 720,917 - Atu0721 0.17 +1.1 720,930 - Atu0721 0.18 -0.2 721,056 - Atu0721 0.29 +1.6 721,190 + Atu0721 0.42 +2.2 721,190 + Atu0721 0.42 -0.4 721,198 - Atu0721 0.42 +0.2 721,248 - Atu0721 0.47 -0.4 721,333 + Atu0721 0.54 +1.4 721,333 + Atu0721 0.54 -1.0 721,336 - Atu0721 0.55 -2.5
Or see this region's nucleotide sequence