Experiment: R2A with Tetracycline 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0357 and Atu0358 are separated by 10 nucleotides Atu0358 and Atu0359 are separated by 15 nucleotides Atu0359 and Atu0360 are separated by 206 nucleotides
Atu0357: Atu0357 - phosphate starvation inducible protein, at 351,087 to 352,142
Atu0357
Atu0358: Atu0358 - hypothetical protein, at 352,153 to 352,659
Atu0358
Atu0359: Atu0359 - hemolysin, at 352,675 to 353,817
Atu0359
Atu0360: Atu0360 - apolipoprotein N-acyltransferase, at 354,024 to 355,613
Atu0360
Position (kb) 352
353
354 Strain fitness (log2 ratio) -2
-1
0
1
2 at 351.743 kb on + strand, within Atu0357 at 351.834 kb on - strand, within Atu0357 at 351.864 kb on + strand, within Atu0357 at 351.887 kb on + strand, within Atu0357 at 352.045 kb on - strand at 352.116 kb on + strand at 352.642 kb on + strand at 352.650 kb on - strand at 352.741 kb on - strand at 352.743 kb on + strand at 352.751 kb on - strand at 352.849 kb on + strand, within Atu0359 at 352.864 kb on + strand, within Atu0359 at 352.977 kb on - strand, within Atu0359 at 352.988 kb on + strand, within Atu0359 at 353.025 kb on - strand, within Atu0359 at 353.025 kb on - strand, within Atu0359 at 353.084 kb on - strand, within Atu0359 at 353.189 kb on - strand, within Atu0359 at 353.242 kb on - strand, within Atu0359 at 353.291 kb on + strand, within Atu0359 at 353.291 kb on + strand, within Atu0359 at 353.298 kb on - strand, within Atu0359 at 353.313 kb on + strand, within Atu0359 at 353.313 kb on + strand, within Atu0359 at 353.321 kb on - strand, within Atu0359 at 353.372 kb on + strand, within Atu0359 at 353.445 kb on + strand, within Atu0359 at 353.601 kb on + strand, within Atu0359 at 353.627 kb on - strand, within Atu0359 at 353.636 kb on - strand, within Atu0359 at 353.722 kb on + strand at 353.756 kb on + strand at 353.764 kb on - strand at 353.798 kb on - strand at 353.803 kb on - strand at 353.810 kb on - strand at 353.879 kb on - strand at 353.923 kb on - strand at 353.925 kb on + strand at 354.029 kb on - strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.043 kb on + strand at 354.051 kb on - strand at 354.056 kb on - strand at 354.207 kb on + strand, within Atu0360 at 354.273 kb on + strand, within Atu0360 at 354.371 kb on + strand, within Atu0360 at 354.371 kb on + strand, within Atu0360 at 354.404 kb on + strand, within Atu0360 at 354.417 kb on - strand, within Atu0360 at 354.495 kb on + strand, within Atu0360 at 354.560 kb on - strand, within Atu0360 at 354.617 kb on - strand, within Atu0360 at 354.665 kb on - strand, within Atu0360 at 354.708 kb on + strand, within Atu0360 at 354.764 kb on - strand, within Atu0360
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM remove 351,743 + Atu0357 0.62 +0.3 351,834 - Atu0357 0.71 +0.6 351,864 + Atu0357 0.74 -0.1 351,887 + Atu0357 0.76 -0.6 352,045 - +1.7 352,116 + -1.0 352,642 + -0.5 352,650 - -0.3 352,741 - -1.6 352,743 + -1.2 352,751 - -1.1 352,849 + Atu0359 0.15 -0.4 352,864 + Atu0359 0.17 -0.6 352,977 - Atu0359 0.26 -0.8 352,988 + Atu0359 0.27 -2.0 353,025 - Atu0359 0.31 -0.5 353,025 - Atu0359 0.31 -1.7 353,084 - Atu0359 0.36 -1.4 353,189 - Atu0359 0.45 -1.6 353,242 - Atu0359 0.50 -0.4 353,291 + Atu0359 0.54 -0.1 353,291 + Atu0359 0.54 -2.0 353,298 - Atu0359 0.55 -0.7 353,313 + Atu0359 0.56 -0.0 353,313 + Atu0359 0.56 -0.8 353,321 - Atu0359 0.57 +0.0 353,372 + Atu0359 0.61 -0.1 353,445 + Atu0359 0.67 +0.4 353,601 + Atu0359 0.81 -0.6 353,627 - Atu0359 0.83 -1.4 353,636 - Atu0359 0.84 -1.2 353,722 + -0.5 353,756 + -1.1 353,764 - +0.4 353,798 - -1.3 353,803 - +1.1 353,810 - -0.5 353,879 - +0.6 353,923 - -0.2 353,925 + +0.9 354,029 - -0.6 354,043 + -0.7 354,043 + +1.9 354,043 + -0.9 354,043 + +0.1 354,043 + +0.2 354,043 + +0.3 354,051 - -0.3 354,056 - +0.3 354,207 + Atu0360 0.12 -1.0 354,273 + Atu0360 0.16 +0.3 354,371 + Atu0360 0.22 +0.4 354,371 + Atu0360 0.22 -0.2 354,404 + Atu0360 0.24 -0.2 354,417 - Atu0360 0.25 +0.4 354,495 + Atu0360 0.30 +0.2 354,560 - Atu0360 0.34 +0.5 354,617 - Atu0360 0.37 +1.5 354,665 - Atu0360 0.40 -1.0 354,708 + Atu0360 0.43 +0.5 354,764 - Atu0360 0.47 +0.2
Or see this region's nucleotide sequence