Experiment: R2A with Tetracycline 0.002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0233 and Atu0234 are separated by 3 nucleotides Atu0234 and Atu0235 are separated by 131 nucleotides
Atu0233: Atu0233 - lysozyme, at 233,224 to 234,321
Atu0233
Atu0234: Atu0234 - conserved hypothetical protein, membrane protein, at 234,325 to 235,200
Atu0234
Atu0235: Atu0235 - transcriptional regulator, GntR family, at 235,332 to 236,705
Atu0235
Position (kb) 234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 233.388 kb on + strand, within Atu0233 at 233.429 kb on - strand, within Atu0233 at 233.432 kb on + strand, within Atu0233 at 233.448 kb on + strand, within Atu0233 at 233.486 kb on - strand, within Atu0233 at 233.619 kb on + strand, within Atu0233 at 233.654 kb on + strand, within Atu0233 at 233.708 kb on + strand, within Atu0233 at 233.708 kb on + strand, within Atu0233 at 233.708 kb on - strand, within Atu0233 at 233.716 kb on - strand, within Atu0233 at 233.730 kb on + strand, within Atu0233 at 233.734 kb on + strand, within Atu0233 at 233.734 kb on + strand, within Atu0233 at 233.742 kb on - strand, within Atu0233 at 233.752 kb on - strand, within Atu0233 at 233.830 kb on + strand, within Atu0233 at 233.897 kb on - strand, within Atu0233 at 233.999 kb on + strand, within Atu0233 at 234.063 kb on + strand, within Atu0233 at 234.063 kb on + strand, within Atu0233 at 234.169 kb on - strand, within Atu0233 at 234.181 kb on + strand, within Atu0233 at 234.366 kb on - strand at 234.374 kb on - strand at 234.390 kb on - strand at 234.426 kb on + strand, within Atu0234 at 234.443 kb on + strand, within Atu0234 at 234.489 kb on - strand, within Atu0234 at 234.669 kb on + strand, within Atu0234 at 234.689 kb on - strand, within Atu0234 at 234.939 kb on + strand, within Atu0234 at 234.957 kb on + strand, within Atu0234 at 235.023 kb on + strand, within Atu0234 at 235.203 kb on - strand at 235.214 kb on - strand at 235.328 kb on + strand at 235.388 kb on + strand at 235.393 kb on + strand at 235.393 kb on + strand at 235.401 kb on - strand at 235.401 kb on - strand at 235.401 kb on - strand at 235.401 kb on - strand at 235.433 kb on + strand at 235.433 kb on + strand at 235.441 kb on - strand at 235.441 kb on - strand at 235.692 kb on + strand, within Atu0235 at 235.783 kb on + strand, within Atu0235 at 235.811 kb on - strand, within Atu0235 at 235.813 kb on + strand, within Atu0235 at 235.813 kb on + strand, within Atu0235 at 235.813 kb on + strand, within Atu0235 at 235.813 kb on + strand, within Atu0235 at 235.815 kb on + strand, within Atu0235 at 235.815 kb on + strand, within Atu0235 at 235.821 kb on - strand, within Atu0235 at 235.821 kb on - strand, within Atu0235 at 235.821 kb on - strand, within Atu0235 at 235.823 kb on - strand, within Atu0235 at 235.825 kb on + strand, within Atu0235 at 235.949 kb on + strand, within Atu0235 at 235.980 kb on + strand, within Atu0235 at 235.982 kb on + strand, within Atu0235 at 235.982 kb on + strand, within Atu0235 at 235.982 kb on + strand, within Atu0235 at 235.984 kb on + strand, within Atu0235 at 235.993 kb on - strand, within Atu0235 at 235.993 kb on - strand, within Atu0235 at 236.086 kb on + strand, within Atu0235 at 236.094 kb on - strand, within Atu0235 at 236.142 kb on + strand, within Atu0235 at 236.150 kb on - strand, within Atu0235 at 236.153 kb on + strand, within Atu0235
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Tetracycline 0.002 mM remove 233,388 + Atu0233 0.15 -1.3 233,429 - Atu0233 0.19 -1.5 233,432 + Atu0233 0.19 -0.0 233,448 + Atu0233 0.20 -1.1 233,486 - Atu0233 0.24 -2.8 233,619 + Atu0233 0.36 -1.4 233,654 + Atu0233 0.39 -2.4 233,708 + Atu0233 0.44 +0.3 233,708 + Atu0233 0.44 +1.2 233,708 - Atu0233 0.44 +0.3 233,716 - Atu0233 0.45 -1.2 233,730 + Atu0233 0.46 -0.7 233,734 + Atu0233 0.46 -0.4 233,734 + Atu0233 0.46 -1.8 233,742 - Atu0233 0.47 -1.7 233,752 - Atu0233 0.48 -2.1 233,830 + Atu0233 0.55 -1.0 233,897 - Atu0233 0.61 -2.0 233,999 + Atu0233 0.71 -2.0 234,063 + Atu0233 0.76 -1.2 234,063 + Atu0233 0.76 +0.3 234,169 - Atu0233 0.86 -2.1 234,181 + Atu0233 0.87 -1.5 234,366 - -0.1 234,374 - -0.2 234,390 - -1.2 234,426 + Atu0234 0.12 +0.8 234,443 + Atu0234 0.13 -0.0 234,489 - Atu0234 0.19 -0.6 234,669 + Atu0234 0.39 +0.3 234,689 - Atu0234 0.42 -0.1 234,939 + Atu0234 0.70 +0.2 234,957 + Atu0234 0.72 +0.2 235,023 + Atu0234 0.80 -0.1 235,203 - +1.4 235,214 - +1.2 235,328 + -1.3 235,388 + +0.4 235,393 + +1.8 235,393 + -0.4 235,401 - +0.7 235,401 - -0.4 235,401 - -0.1 235,401 - +0.0 235,433 + +0.3 235,433 + +1.8 235,441 - +0.1 235,441 - -1.4 235,692 + Atu0235 0.26 +0.2 235,783 + Atu0235 0.33 -1.0 235,811 - Atu0235 0.35 -0.8 235,813 + Atu0235 0.35 -0.3 235,813 + Atu0235 0.35 +0.3 235,813 + Atu0235 0.35 +0.6 235,813 + Atu0235 0.35 -0.4 235,815 + Atu0235 0.35 +0.5 235,815 + Atu0235 0.35 -0.3 235,821 - Atu0235 0.36 +0.2 235,821 - Atu0235 0.36 -0.6 235,821 - Atu0235 0.36 +0.5 235,823 - Atu0235 0.36 -0.5 235,825 + Atu0235 0.36 +0.1 235,949 + Atu0235 0.45 +0.2 235,980 + Atu0235 0.47 +1.7 235,982 + Atu0235 0.47 +0.0 235,982 + Atu0235 0.47 -0.1 235,982 + Atu0235 0.47 +0.1 235,984 + Atu0235 0.47 -0.9 235,993 - Atu0235 0.48 +0.3 235,993 - Atu0235 0.48 +0.1 236,086 + Atu0235 0.55 -0.7 236,094 - Atu0235 0.55 +0.7 236,142 + Atu0235 0.59 +0.3 236,150 - Atu0235 0.60 +0.9 236,153 + Atu0235 0.60 +0.9
Or see this region's nucleotide sequence