Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27240

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27230 and ABID97_RS27235 are separated by 87 nucleotidesABID97_RS27235 and ABID97_RS27240 are separated by 142 nucleotidesABID97_RS27240 and ABID97_RS27245 are separated by 136 nucleotidesABID97_RS27245 and ABID97_RS27250 are separated by 264 nucleotides ABID97_RS27230: ABID97_RS27230 - dihydrofolate reductase family protein, at 362,398 to 362,976 _RS27230 ABID97_RS27235: ABID97_RS27235 - hypothetical protein, at 363,064 to 363,306 _RS27235 ABID97_RS27240: ABID97_RS27240 - hypothetical protein, at 363,449 to 363,802 _RS27240 ABID97_RS27245: ABID97_RS27245 - DUF6228 family protein, at 363,939 to 364,358 _RS27245 ABID97_RS27250: ABID97_RS27250 - antibiotic biosynthesis monooxygenase, at 364,623 to 364,946 _RS27250 Position (kb) 363 364Strain fitness (log2 ratio) -2 -1 0 1at 362.858 kb on - strand, within ABID97_RS27230at 362.977 kb on + strandat 363.249 kb on + strand, within ABID97_RS27235at 363.664 kb on - strand, within ABID97_RS27240at 364.026 kb on + strand, within ABID97_RS27245at 364.027 kb on - strand, within ABID97_RS27245at 364.027 kb on - strand, within ABID97_RS27245at 364.263 kb on + strand, within ABID97_RS27245at 364.264 kb on - strand, within ABID97_RS27245

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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362,858 - ABID97_RS27230 0.79 -1.5
362,977 + -0.2
363,249 + ABID97_RS27235 0.76 -0.8
363,664 - ABID97_RS27240 0.61 -1.9
364,026 + ABID97_RS27245 0.21 +0.9
364,027 - ABID97_RS27245 0.21 -0.1
364,027 - ABID97_RS27245 0.21 +1.5
364,263 + ABID97_RS27245 0.77 +0.4
364,264 - ABID97_RS27245 0.77 -0.0

Or see this region's nucleotide sequence