Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25010

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25005 and ABID97_RS25010 are separated by 19 nucleotidesABID97_RS25010 and ABID97_RS25015 are separated by 89 nucleotidesABID97_RS25015 and ABID97_RS25020 are separated by 10 nucleotides ABID97_RS25005: ABID97_RS25005 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 5,176,270 to 5,177,223 _RS25005 ABID97_RS25010: ABID97_RS25010 - septal ring lytic transglycosylase RlpA family protein, at 5,177,243 to 5,177,827 _RS25010 ABID97_RS25015: ABID97_RS25015 - methylenetetrahydrofolate reductase [NAD(P)H], at 5,177,917 to 5,178,741 _RS25015 ABID97_RS25020: ABID97_RS25020 - TlyA family RNA methyltransferase, at 5,178,752 to 5,179,549 _RS25020 Position (kb) 5177 5178Strain fitness (log2 ratio) -2 -1 0 1 2at 5176.280 kb on - strandat 5176.280 kb on - strandat 5176.280 kb on - strandat 5176.429 kb on + strand, within ABID97_RS25005at 5176.429 kb on + strand, within ABID97_RS25005at 5176.429 kb on + strand, within ABID97_RS25005at 5176.582 kb on + strand, within ABID97_RS25005at 5176.582 kb on + strand, within ABID97_RS25005at 5176.630 kb on + strand, within ABID97_RS25005at 5176.630 kb on + strand, within ABID97_RS25005at 5176.631 kb on - strand, within ABID97_RS25005at 5176.849 kb on + strand, within ABID97_RS25005at 5176.849 kb on + strand, within ABID97_RS25005at 5176.849 kb on + strand, within ABID97_RS25005at 5176.849 kb on + strand, within ABID97_RS25005at 5176.850 kb on - strand, within ABID97_RS25005at 5176.850 kb on - strand, within ABID97_RS25005at 5176.867 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.924 kb on + strand, within ABID97_RS25005at 5176.925 kb on - strand, within ABID97_RS25005at 5176.925 kb on - strand, within ABID97_RS25005at 5176.925 kb on - strand, within ABID97_RS25005at 5176.925 kb on - strand, within ABID97_RS25005at 5176.925 kb on - strand, within ABID97_RS25005at 5176.925 kb on - strand, within ABID97_RS25005at 5176.925 kb on - strand, within ABID97_RS25005at 5177.125 kb on + strand, within ABID97_RS25005at 5177.125 kb on + strand, within ABID97_RS25005at 5177.126 kb on - strand, within ABID97_RS25005at 5177.446 kb on - strand, within ABID97_RS25010at 5177.608 kb on - strand, within ABID97_RS25010at 5177.608 kb on - strand, within ABID97_RS25010at 5177.935 kb on + strandat 5177.969 kb on + strandat 5177.969 kb on + strandat 5178.221 kb on + strand, within ABID97_RS25015at 5178.221 kb on + strand, within ABID97_RS25015at 5178.221 kb on + strand, within ABID97_RS25015at 5178.221 kb on + strand, within ABID97_RS25015at 5178.222 kb on - strand, within ABID97_RS25015at 5178.407 kb on + strand, within ABID97_RS25015at 5178.407 kb on + strand, within ABID97_RS25015at 5178.408 kb on - strand, within ABID97_RS25015at 5178.408 kb on - strand, within ABID97_RS25015at 5178.623 kb on + strand, within ABID97_RS25015at 5178.656 kb on + strand, within ABID97_RS25015at 5178.656 kb on + strand, within ABID97_RS25015at 5178.656 kb on + strand, within ABID97_RS25015at 5178.657 kb on - strand, within ABID97_RS25015at 5178.657 kb on - strand, within ABID97_RS25015at 5178.657 kb on - strand, within ABID97_RS25015at 5178.657 kb on - strand, within ABID97_RS25015at 5178.657 kb on - strand, within ABID97_RS25015

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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5,176,280 - -0.2
5,176,280 - -0.4
5,176,280 - +0.0
5,176,429 + ABID97_RS25005 0.17 -0.5
5,176,429 + ABID97_RS25005 0.17 +0.8
5,176,429 + ABID97_RS25005 0.17 -0.5
5,176,582 + ABID97_RS25005 0.33 +0.1
5,176,582 + ABID97_RS25005 0.33 -0.1
5,176,630 + ABID97_RS25005 0.38 +0.4
5,176,630 + ABID97_RS25005 0.38 +0.6
5,176,631 - ABID97_RS25005 0.38 +0.1
5,176,849 + ABID97_RS25005 0.61 +0.2
5,176,849 + ABID97_RS25005 0.61 +0.8
5,176,849 + ABID97_RS25005 0.61 -1.4
5,176,849 + ABID97_RS25005 0.61 +0.0
5,176,850 - ABID97_RS25005 0.61 -0.1
5,176,850 - ABID97_RS25005 0.61 -0.1
5,176,867 + ABID97_RS25005 0.63 +0.6
5,176,924 + ABID97_RS25005 0.69 +0.1
5,176,924 + ABID97_RS25005 0.69 +1.0
5,176,924 + ABID97_RS25005 0.69 +0.3
5,176,924 + ABID97_RS25005 0.69 +0.0
5,176,924 + ABID97_RS25005 0.69 +0.2
5,176,924 + ABID97_RS25005 0.69 -0.2
5,176,924 + ABID97_RS25005 0.69 +0.1
5,176,924 + ABID97_RS25005 0.69 -0.5
5,176,924 + ABID97_RS25005 0.69 +0.3
5,176,924 + ABID97_RS25005 0.69 -0.1
5,176,925 - ABID97_RS25005 0.69 +0.5
5,176,925 - ABID97_RS25005 0.69 +0.3
5,176,925 - ABID97_RS25005 0.69 +0.6
5,176,925 - ABID97_RS25005 0.69 -0.5
5,176,925 - ABID97_RS25005 0.69 +0.4
5,176,925 - ABID97_RS25005 0.69 +0.2
5,176,925 - ABID97_RS25005 0.69 +0.9
5,177,125 + ABID97_RS25005 0.90 +1.1
5,177,125 + ABID97_RS25005 0.90 +0.4
5,177,126 - ABID97_RS25005 0.90 -0.1
5,177,446 - ABID97_RS25010 0.35 -0.5
5,177,608 - ABID97_RS25010 0.62 +0.2
5,177,608 - ABID97_RS25010 0.62 -0.6
5,177,935 + -0.7
5,177,969 + +1.8
5,177,969 + +0.6
5,178,221 + ABID97_RS25015 0.37 +0.5
5,178,221 + ABID97_RS25015 0.37 +1.0
5,178,221 + ABID97_RS25015 0.37 -0.2
5,178,221 + ABID97_RS25015 0.37 -0.2
5,178,222 - ABID97_RS25015 0.37 -0.4
5,178,407 + ABID97_RS25015 0.59 +1.2
5,178,407 + ABID97_RS25015 0.59 +0.6
5,178,408 - ABID97_RS25015 0.60 +1.3
5,178,408 - ABID97_RS25015 0.60 -0.5
5,178,623 + ABID97_RS25015 0.86 -0.2
5,178,656 + ABID97_RS25015 0.90 -1.8
5,178,656 + ABID97_RS25015 0.90 +1.0
5,178,656 + ABID97_RS25015 0.90 -0.5
5,178,657 - ABID97_RS25015 0.90 -1.5
5,178,657 - ABID97_RS25015 0.90 -0.8
5,178,657 - ABID97_RS25015 0.90 -0.8
5,178,657 - ABID97_RS25015 0.90 +2.6
5,178,657 - ABID97_RS25015 0.90 +0.8

Or see this region's nucleotide sequence