Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22650 and ABID97_RS22655 are separated by 58 nucleotides ABID97_RS22655 and ABID97_RS22660 are separated by 126 nucleotides ABID97_RS22660 and ABID97_RS22665 are separated by 102 nucleotides
ABID97_RS22650: ABID97_RS22650 - Na/Pi cotransporter family protein, at 4,691,789 to 4,693,450
_RS22650
ABID97_RS22655: ABID97_RS22655 - response regulator transcription factor, at 4,693,509 to 4,693,916
_RS22655
ABID97_RS22660: ABID97_RS22660 - quinone oxidoreductase, at 4,694,043 to 4,695,026
_RS22660
ABID97_RS22665: ABID97_RS22665 - DMT family transporter, at 4,695,129 to 4,696,037
_RS22665
Position (kb) 4694
4695
4696 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4693.187 kb on - strand, within ABID97_RS22650 at 4693.187 kb on - strand, within ABID97_RS22650 at 4693.250 kb on + strand, within ABID97_RS22650 at 4693.250 kb on + strand, within ABID97_RS22650 at 4693.251 kb on - strand, within ABID97_RS22650 at 4693.251 kb on - strand, within ABID97_RS22650 at 4693.251 kb on - strand, within ABID97_RS22650 at 4693.953 kb on + strand at 4693.953 kb on + strand at 4693.994 kb on + strand at 4693.995 kb on - strand at 4694.122 kb on + strand at 4694.123 kb on - strand at 4694.242 kb on + strand, within ABID97_RS22660 at 4694.243 kb on - strand, within ABID97_RS22660 at 4694.243 kb on - strand, within ABID97_RS22660 at 4694.243 kb on - strand, within ABID97_RS22660 at 4694.243 kb on - strand, within ABID97_RS22660 at 4694.243 kb on - strand, within ABID97_RS22660 at 4694.380 kb on + strand, within ABID97_RS22660 at 4694.380 kb on + strand, within ABID97_RS22660 at 4694.381 kb on - strand, within ABID97_RS22660 at 4694.447 kb on - strand, within ABID97_RS22660 at 4694.447 kb on - strand, within ABID97_RS22660 at 4694.447 kb on - strand, within ABID97_RS22660 at 4694.642 kb on - strand, within ABID97_RS22660 at 4694.642 kb on - strand, within ABID97_RS22660 at 4694.770 kb on + strand, within ABID97_RS22660 at 4694.770 kb on + strand, within ABID97_RS22660 at 4694.771 kb on - strand, within ABID97_RS22660 at 4694.771 kb on - strand, within ABID97_RS22660 at 4694.890 kb on + strand, within ABID97_RS22660 at 4694.890 kb on + strand, within ABID97_RS22660 at 4694.891 kb on - strand, within ABID97_RS22660 at 4695.116 kb on - strand at 4695.384 kb on + strand, within ABID97_RS22665 at 4695.384 kb on + strand, within ABID97_RS22665 at 4695.385 kb on - strand, within ABID97_RS22665 at 4695.385 kb on - strand, within ABID97_RS22665 at 4695.399 kb on + strand, within ABID97_RS22665 at 4695.615 kb on + strand, within ABID97_RS22665 at 4695.615 kb on + strand, within ABID97_RS22665 at 4695.615 kb on + strand, within ABID97_RS22665 at 4695.616 kb on - strand, within ABID97_RS22665 at 4695.616 kb on - strand, within ABID97_RS22665 at 4695.616 kb on - strand, within ABID97_RS22665 at 4695.648 kb on + strand, within ABID97_RS22665 at 4695.649 kb on - strand, within ABID97_RS22665 at 4695.649 kb on - strand, within ABID97_RS22665 at 4695.649 kb on - strand, within ABID97_RS22665 at 4695.649 kb on - strand, within ABID97_RS22665 at 4695.786 kb on + strand, within ABID97_RS22665 at 4695.786 kb on + strand, within ABID97_RS22665 at 4695.787 kb on - strand, within ABID97_RS22665 at 4695.787 kb on - strand, within ABID97_RS22665 at 4695.787 kb on - strand, within ABID97_RS22665 at 4695.856 kb on - strand, within ABID97_RS22665 at 4695.978 kb on + strand at 4695.979 kb on - strand at 4695.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 4,693,187 - ABID97_RS22650 0.84 -0.2 4,693,187 - ABID97_RS22650 0.84 +0.9 4,693,250 + ABID97_RS22650 0.88 -0.1 4,693,250 + ABID97_RS22650 0.88 +1.8 4,693,251 - ABID97_RS22650 0.88 +0.2 4,693,251 - ABID97_RS22650 0.88 +0.5 4,693,251 - ABID97_RS22650 0.88 +0.1 4,693,953 + -0.2 4,693,953 + -0.6 4,693,994 + +0.1 4,693,995 - -1.4 4,694,122 + -0.4 4,694,123 - -0.2 4,694,242 + ABID97_RS22660 0.20 +0.6 4,694,243 - ABID97_RS22660 0.20 +0.3 4,694,243 - ABID97_RS22660 0.20 +1.8 4,694,243 - ABID97_RS22660 0.20 -0.4 4,694,243 - ABID97_RS22660 0.20 -0.2 4,694,243 - ABID97_RS22660 0.20 +0.3 4,694,380 + ABID97_RS22660 0.34 +0.6 4,694,380 + ABID97_RS22660 0.34 +1.1 4,694,381 - ABID97_RS22660 0.34 -0.2 4,694,447 - ABID97_RS22660 0.41 -0.1 4,694,447 - ABID97_RS22660 0.41 +0.4 4,694,447 - ABID97_RS22660 0.41 -0.1 4,694,642 - ABID97_RS22660 0.61 -0.6 4,694,642 - ABID97_RS22660 0.61 -0.0 4,694,770 + ABID97_RS22660 0.74 +1.1 4,694,770 + ABID97_RS22660 0.74 -0.1 4,694,771 - ABID97_RS22660 0.74 -0.0 4,694,771 - ABID97_RS22660 0.74 -0.1 4,694,890 + ABID97_RS22660 0.86 +0.3 4,694,890 + ABID97_RS22660 0.86 +1.0 4,694,891 - ABID97_RS22660 0.86 +0.6 4,695,116 - +0.3 4,695,384 + ABID97_RS22665 0.28 -0.7 4,695,384 + ABID97_RS22665 0.28 +0.6 4,695,385 - ABID97_RS22665 0.28 -0.1 4,695,385 - ABID97_RS22665 0.28 +0.4 4,695,399 + ABID97_RS22665 0.30 -0.5 4,695,615 + ABID97_RS22665 0.53 -0.3 4,695,615 + ABID97_RS22665 0.53 +0.0 4,695,615 + ABID97_RS22665 0.53 -1.0 4,695,616 - ABID97_RS22665 0.54 -1.1 4,695,616 - ABID97_RS22665 0.54 -2.1 4,695,616 - ABID97_RS22665 0.54 +1.2 4,695,648 + ABID97_RS22665 0.57 -0.6 4,695,649 - ABID97_RS22665 0.57 -1.8 4,695,649 - ABID97_RS22665 0.57 +0.4 4,695,649 - ABID97_RS22665 0.57 -0.1 4,695,649 - ABID97_RS22665 0.57 -1.2 4,695,786 + ABID97_RS22665 0.72 +0.1 4,695,786 + ABID97_RS22665 0.72 -0.0 4,695,787 - ABID97_RS22665 0.72 -0.6 4,695,787 - ABID97_RS22665 0.72 -0.3 4,695,787 - ABID97_RS22665 0.72 -0.1 4,695,856 - ABID97_RS22665 0.80 -0.2 4,695,978 + -0.1 4,695,979 - -0.6 4,695,979 - -0.4
Or see this region's nucleotide sequence