Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22355 and ABID97_RS22360 are separated by 10 nucleotides ABID97_RS22360 and ABID97_RS22365 are separated by 6 nucleotides ABID97_RS22365 and ABID97_RS22370 are separated by 43 nucleotides ABID97_RS22370 and ABID97_RS22375 are separated by 82 nucleotides ABID97_RS22375 and ABID97_RS22380 are separated by 56 nucleotides
ABID97_RS22355: ABID97_RS22355 - ABC transporter permease, at 4,633,707 to 4,634,477
_RS22355
ABID97_RS22360: ABID97_RS22360 - nucleoside deaminase, at 4,634,488 to 4,634,964
_RS22360
ABID97_RS22365: ABID97_RS22365 - oxidoreductase-like domain-containing protein, at 4,634,971 to 4,635,195
_RS22365
ABID97_RS22370: ABID97_RS22370 - lipid A hydroxylase LpxO, at 4,635,239 to 4,636,135
_RS22370
ABID97_RS22375: ABID97_RS22375 - OsmC family protein, at 4,636,218 to 4,636,616
_RS22375
ABID97_RS22380: ABID97_RS22380 - winged helix-turn-helix transcriptional regulator, at 4,636,673 to 4,637,140
_RS22380
Position (kb) 4635
4636
4637 Strain fitness (log2 ratio) -1
0
1
2 at 4634.323 kb on - strand, within ABID97_RS22355 at 4634.409 kb on + strand at 4634.409 kb on + strand at 4634.409 kb on + strand at 4634.692 kb on + strand, within ABID97_RS22360 at 4634.692 kb on + strand, within ABID97_RS22360 at 4634.755 kb on + strand, within ABID97_RS22360 at 4634.756 kb on - strand, within ABID97_RS22360 at 4634.756 kb on - strand, within ABID97_RS22360 at 4635.241 kb on - strand at 4635.291 kb on + strand at 4635.295 kb on - strand at 4635.346 kb on - strand, within ABID97_RS22370 at 4635.346 kb on - strand, within ABID97_RS22370 at 4635.346 kb on - strand, within ABID97_RS22370 at 4635.351 kb on + strand, within ABID97_RS22370 at 4635.352 kb on - strand, within ABID97_RS22370 at 4635.352 kb on - strand, within ABID97_RS22370 at 4635.463 kb on - strand, within ABID97_RS22370 at 4635.537 kb on + strand, within ABID97_RS22370 at 4635.537 kb on + strand, within ABID97_RS22370 at 4635.538 kb on - strand, within ABID97_RS22370 at 4635.579 kb on + strand, within ABID97_RS22370 at 4635.603 kb on + strand, within ABID97_RS22370 at 4635.604 kb on - strand, within ABID97_RS22370 at 4635.604 kb on - strand, within ABID97_RS22370 at 4635.795 kb on + strand, within ABID97_RS22370 at 4635.795 kb on + strand, within ABID97_RS22370 at 4635.796 kb on - strand, within ABID97_RS22370 at 4635.807 kb on + strand, within ABID97_RS22370 at 4635.807 kb on + strand, within ABID97_RS22370 at 4635.808 kb on - strand, within ABID97_RS22370 at 4635.808 kb on - strand, within ABID97_RS22370 at 4635.972 kb on + strand, within ABID97_RS22370 at 4636.002 kb on + strand, within ABID97_RS22370 at 4636.002 kb on + strand, within ABID97_RS22370 at 4636.002 kb on + strand, within ABID97_RS22370 at 4636.002 kb on + strand, within ABID97_RS22370 at 4636.002 kb on + strand, within ABID97_RS22370 at 4636.002 kb on + strand, within ABID97_RS22370 at 4636.003 kb on - strand, within ABID97_RS22370 at 4636.003 kb on - strand, within ABID97_RS22370 at 4636.093 kb on - strand at 4636.093 kb on - strand at 4636.152 kb on + strand at 4636.152 kb on + strand at 4636.153 kb on - strand at 4636.182 kb on + strand at 4636.183 kb on - strand at 4636.183 kb on - strand at 4636.183 kb on - strand at 4636.438 kb on + strand, within ABID97_RS22375 at 4636.439 kb on - strand, within ABID97_RS22375 at 4636.655 kb on - strand at 4636.726 kb on - strand, within ABID97_RS22380 at 4636.726 kb on - strand, within ABID97_RS22380 at 4636.726 kb on - strand, within ABID97_RS22380
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 4,634,323 - ABID97_RS22355 0.80 -0.2 4,634,409 + -1.2 4,634,409 + +0.0 4,634,409 + -0.8 4,634,692 + ABID97_RS22360 0.43 +0.2 4,634,692 + ABID97_RS22360 0.43 +1.9 4,634,755 + ABID97_RS22360 0.56 +1.3 4,634,756 - ABID97_RS22360 0.56 -0.9 4,634,756 - ABID97_RS22360 0.56 -0.9 4,635,241 - -0.3 4,635,291 + -0.1 4,635,295 - -0.3 4,635,346 - ABID97_RS22370 0.12 +0.1 4,635,346 - ABID97_RS22370 0.12 +0.2 4,635,346 - ABID97_RS22370 0.12 -0.0 4,635,351 + ABID97_RS22370 0.12 -0.3 4,635,352 - ABID97_RS22370 0.13 +0.2 4,635,352 - ABID97_RS22370 0.13 +0.1 4,635,463 - ABID97_RS22370 0.25 -0.9 4,635,537 + ABID97_RS22370 0.33 -0.1 4,635,537 + ABID97_RS22370 0.33 +0.2 4,635,538 - ABID97_RS22370 0.33 +0.4 4,635,579 + ABID97_RS22370 0.38 +0.0 4,635,603 + ABID97_RS22370 0.41 -0.1 4,635,604 - ABID97_RS22370 0.41 +0.2 4,635,604 - ABID97_RS22370 0.41 +0.0 4,635,795 + ABID97_RS22370 0.62 +0.1 4,635,795 + ABID97_RS22370 0.62 +0.1 4,635,796 - ABID97_RS22370 0.62 +0.7 4,635,807 + ABID97_RS22370 0.63 +1.9 4,635,807 + ABID97_RS22370 0.63 -0.1 4,635,808 - ABID97_RS22370 0.63 -0.3 4,635,808 - ABID97_RS22370 0.63 -0.1 4,635,972 + ABID97_RS22370 0.82 -0.1 4,636,002 + ABID97_RS22370 0.85 +1.3 4,636,002 + ABID97_RS22370 0.85 +0.9 4,636,002 + ABID97_RS22370 0.85 +0.4 4,636,002 + ABID97_RS22370 0.85 -0.3 4,636,002 + ABID97_RS22370 0.85 +0.2 4,636,002 + ABID97_RS22370 0.85 -1.1 4,636,003 - ABID97_RS22370 0.85 +0.1 4,636,003 - ABID97_RS22370 0.85 +0.0 4,636,093 - -0.3 4,636,093 - -0.7 4,636,152 + -0.7 4,636,152 + +0.6 4,636,153 - +1.0 4,636,182 + -0.0 4,636,183 - +1.3 4,636,183 - +0.0 4,636,183 - +0.1 4,636,438 + ABID97_RS22375 0.55 -0.1 4,636,439 - ABID97_RS22375 0.55 -1.3 4,636,655 - +0.3 4,636,726 - ABID97_RS22380 0.11 +0.1 4,636,726 - ABID97_RS22380 0.11 -0.2 4,636,726 - ABID97_RS22380 0.11 -0.1
Or see this region's nucleotide sequence