Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21205 and ABID97_RS21210 are separated by 39 nucleotides ABID97_RS21210 and ABID97_RS21215 overlap by 4 nucleotides ABID97_RS21215 and ABID97_RS21220 are separated by 44 nucleotides ABID97_RS21220 and ABID97_RS21225 are separated by 168 nucleotides
ABID97_RS21205: ABID97_RS21205 - IlvD/Edd family dehydratase, at 4,377,795 to 4,379,531
_RS21205
ABID97_RS21210: ABID97_RS21210 - 2-dehydro-3-deoxygalactonokinase, at 4,379,571 to 4,380,479
_RS21210
ABID97_RS21215: ABID97_RS21215 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 4,380,476 to 4,381,117
_RS21215
ABID97_RS21220: ABID97_RS21220 - aldolase, at 4,381,162 to 4,381,899
_RS21220
ABID97_RS21225: ABID97_RS21225 - hypothetical protein, at 4,382,068 to 4,382,391
_RS21225
Position (kb) 4380
4381
4382 Strain fitness (log2 ratio) -1
0
1 at 4380.082 kb on - strand, within ABID97_RS21210 at 4380.264 kb on + strand, within ABID97_RS21210 at 4380.363 kb on + strand, within ABID97_RS21210 at 4380.366 kb on - strand, within ABID97_RS21210 at 4380.719 kb on + strand, within ABID97_RS21215 at 4380.720 kb on - strand, within ABID97_RS21215 at 4381.035 kb on - strand, within ABID97_RS21215 at 4381.489 kb on + strand, within ABID97_RS21220 at 4381.558 kb on + strand, within ABID97_RS21220 at 4381.558 kb on + strand, within ABID97_RS21220 at 4381.588 kb on + strand, within ABID97_RS21220 at 4381.589 kb on - strand, within ABID97_RS21220 at 4381.711 kb on + strand, within ABID97_RS21220 at 4381.711 kb on + strand, within ABID97_RS21220 at 4381.712 kb on - strand, within ABID97_RS21220 at 4381.712 kb on - strand, within ABID97_RS21220 at 4381.723 kb on + strand, within ABID97_RS21220 at 4381.724 kb on - strand, within ABID97_RS21220 at 4381.938 kb on + strand at 4381.938 kb on + strand at 4381.938 kb on + strand at 4381.939 kb on - strand at 4381.939 kb on - strand at 4381.977 kb on + strand at 4381.978 kb on - strand at 4382.008 kb on + strand at 4382.008 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 4,380,082 - ABID97_RS21210 0.56 -0.1 4,380,264 + ABID97_RS21210 0.76 -0.0 4,380,363 + ABID97_RS21210 0.87 +0.3 4,380,366 - ABID97_RS21210 0.87 -1.1 4,380,719 + ABID97_RS21215 0.38 -1.3 4,380,720 - ABID97_RS21215 0.38 -0.3 4,381,035 - ABID97_RS21215 0.87 -0.5 4,381,489 + ABID97_RS21220 0.44 -0.7 4,381,558 + ABID97_RS21220 0.54 +0.1 4,381,558 + ABID97_RS21220 0.54 +0.6 4,381,588 + ABID97_RS21220 0.58 +0.7 4,381,589 - ABID97_RS21220 0.58 +0.5 4,381,711 + ABID97_RS21220 0.74 -0.0 4,381,711 + ABID97_RS21220 0.74 +0.9 4,381,712 - ABID97_RS21220 0.75 -1.0 4,381,712 - ABID97_RS21220 0.75 -1.3 4,381,723 + ABID97_RS21220 0.76 -0.5 4,381,724 - ABID97_RS21220 0.76 +0.4 4,381,938 + +0.9 4,381,938 + +0.0 4,381,938 + +0.4 4,381,939 - +1.0 4,381,939 - +0.1 4,381,977 + +1.0 4,381,978 - -0.7 4,382,008 + -1.5 4,382,008 + +0.3
Or see this region's nucleotide sequence