Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20850 and ABID97_RS20855 overlap by 4 nucleotides ABID97_RS20855 and ABID97_RS20860 are separated by 40 nucleotides
ABID97_RS20850: ABID97_RS20850 - efflux RND transporter permease subunit, at 4,308,054 to 4,311,297
_RS20850
ABID97_RS20855: ABID97_RS20855 - efflux RND transporter permease subunit, at 4,311,294 to 4,314,401
_RS20855
ABID97_RS20860: ABID97_RS20860 - efflux RND transporter periplasmic adaptor subunit, at 4,314,442 to 4,315,788
_RS20860
Position (kb) 4311
4312
4313
4314
4315 Strain fitness (log2 ratio) -1
0
1
2 at 4310.609 kb on + strand, within ABID97_RS20850 at 4311.748 kb on + strand, within ABID97_RS20855 at 4311.748 kb on + strand, within ABID97_RS20855 at 4311.748 kb on + strand, within ABID97_RS20855 at 4311.749 kb on - strand, within ABID97_RS20855 at 4311.749 kb on - strand, within ABID97_RS20855 at 4311.757 kb on + strand, within ABID97_RS20855 at 4311.758 kb on - strand, within ABID97_RS20855 at 4311.779 kb on - strand, within ABID97_RS20855 at 4312.186 kb on + strand, within ABID97_RS20855 at 4312.256 kb on - strand, within ABID97_RS20855 at 4312.442 kb on - strand, within ABID97_RS20855 at 4312.832 kb on - strand, within ABID97_RS20855 at 4313.242 kb on + strand, within ABID97_RS20855 at 4313.243 kb on - strand, within ABID97_RS20855 at 4313.243 kb on - strand, within ABID97_RS20855 at 4313.418 kb on + strand, within ABID97_RS20855 at 4314.731 kb on + strand, within ABID97_RS20860 at 4314.731 kb on + strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.732 kb on - strand, within ABID97_RS20860 at 4314.737 kb on + strand, within ABID97_RS20860 at 4314.737 kb on + strand, within ABID97_RS20860 at 4314.738 kb on - strand, within ABID97_RS20860
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 4,310,609 + ABID97_RS20850 0.79 -0.4 4,311,748 + ABID97_RS20855 0.15 +0.6 4,311,748 + ABID97_RS20855 0.15 -0.1 4,311,748 + ABID97_RS20855 0.15 -1.4 4,311,749 - ABID97_RS20855 0.15 +0.2 4,311,749 - ABID97_RS20855 0.15 +0.2 4,311,757 + ABID97_RS20855 0.15 +0.9 4,311,758 - ABID97_RS20855 0.15 -1.6 4,311,779 - ABID97_RS20855 0.16 +1.9 4,312,186 + ABID97_RS20855 0.29 -0.2 4,312,256 - ABID97_RS20855 0.31 +1.1 4,312,442 - ABID97_RS20855 0.37 +0.4 4,312,832 - ABID97_RS20855 0.49 -0.0 4,313,242 + ABID97_RS20855 0.63 +0.3 4,313,243 - ABID97_RS20855 0.63 -1.3 4,313,243 - ABID97_RS20855 0.63 +1.1 4,313,418 + ABID97_RS20855 0.68 -0.5 4,314,731 + ABID97_RS20860 0.21 +0.0 4,314,731 + ABID97_RS20860 0.21 +0.1 4,314,732 - ABID97_RS20860 0.22 +0.1 4,314,732 - ABID97_RS20860 0.22 +1.0 4,314,732 - ABID97_RS20860 0.22 +1.5 4,314,732 - ABID97_RS20860 0.22 +0.2 4,314,732 - ABID97_RS20860 0.22 +0.1 4,314,732 - ABID97_RS20860 0.22 +0.0 4,314,737 + ABID97_RS20860 0.22 +0.1 4,314,737 + ABID97_RS20860 0.22 -0.2 4,314,738 - ABID97_RS20860 0.22 +0.1
Or see this region's nucleotide sequence