Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18125 and ABID97_RS18130 overlap by 89 nucleotides ABID97_RS18130 and ABID97_RS18135 overlap by 1 nucleotides
ABID97_RS18125: ABID97_RS18125 - D-amino acid dehydrogenase, at 3,742,508 to 3,743,914
_RS18125
ABID97_RS18130: ABID97_RS18130 - 2-dehydropantoate 2-reductase, at 3,743,826 to 3,744,857
_RS18130
ABID97_RS18135: ABID97_RS18135 - alanine--tRNA ligase, at 3,744,857 to 3,747,481
_RS18135
Position (kb)
3743
3744
3745 Strain fitness (log2 ratio)
-2
-1
0
1 at 3742.873 kb on - strand, within ABID97_RS18125 at 3742.873 kb on - strand, within ABID97_RS18125 at 3742.873 kb on - strand, within ABID97_RS18125 at 3742.873 kb on - strand, within ABID97_RS18125 at 3742.873 kb on - strand, within ABID97_RS18125 at 3742.954 kb on - strand, within ABID97_RS18125 at 3742.999 kb on - strand, within ABID97_RS18125 at 3743.019 kb on + strand, within ABID97_RS18125 at 3743.020 kb on - strand, within ABID97_RS18125 at 3743.376 kb on + strand, within ABID97_RS18125 at 3743.463 kb on + strand, within ABID97_RS18125 at 3743.713 kb on - strand, within ABID97_RS18125 at 3743.715 kb on + strand, within ABID97_RS18125 at 3743.716 kb on - strand, within ABID97_RS18125 at 3743.810 kb on + strand at 3743.828 kb on - strand at 3743.828 kb on - strand at 3744.437 kb on - strand, within ABID97_RS18130 at 3744.437 kb on - strand, within ABID97_RS18130 at 3744.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 3,742,873 - ABID97_RS18125 0.26 +0.3 3,742,873 - ABID97_RS18125 0.26 -0.1 3,742,873 - ABID97_RS18125 0.26 -0.2 3,742,873 - ABID97_RS18125 0.26 -0.6 3,742,873 - ABID97_RS18125 0.26 -0.3 3,742,954 - ABID97_RS18125 0.32 -0.3 3,742,999 - ABID97_RS18125 0.35 -0.3 3,743,019 + ABID97_RS18125 0.36 -0.1 3,743,020 - ABID97_RS18125 0.36 -1.3 3,743,376 + ABID97_RS18125 0.62 +0.4 3,743,463 + ABID97_RS18125 0.68 -0.4 3,743,713 - ABID97_RS18125 0.86 -1.9 3,743,715 + ABID97_RS18125 0.86 +0.8 3,743,716 - ABID97_RS18125 0.86 +0.2 3,743,810 + -0.3 3,743,828 - -1.9 3,743,828 - -0.1 3,744,437 - ABID97_RS18130 0.59 -0.6 3,744,437 - ABID97_RS18130 0.59 -0.5 3,744,785 - +0.2
Or see this region's nucleotide sequence