Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11845 and ABID97_RS11850 overlap by 1 nucleotides ABID97_RS11850 and ABID97_RS11855 are separated by 201 nucleotides ABID97_RS11855 and ABID97_RS11860 are separated by 52 nucleotides
ABID97_RS11845: ABID97_RS11845 - hypothetical protein, at 2,445,405 to 2,447,153
_RS11845
ABID97_RS11850: ABID97_RS11850 - dual specificity protein phosphatase, at 2,447,153 to 2,447,683
_RS11850
ABID97_RS11855: ABID97_RS11855 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,447,885 to 2,449,270
_RS11855
ABID97_RS11860: ABID97_RS11860 - UDP-glucuronic acid decarboxylase family protein, at 2,449,323 to 2,450,372
_RS11860
Position (kb)
2447
2448
2449
2450 Strain fitness (log2 ratio)
-1
0
1 at 2447.847 kb on + strand at 2448.177 kb on - strand, within ABID97_RS11855 at 2448.492 kb on - strand, within ABID97_RS11855 at 2449.077 kb on - strand, within ABID97_RS11855 at 2449.077 kb on - strand, within ABID97_RS11855 at 2449.323 kb on - strand at 2449.548 kb on + strand, within ABID97_RS11860 at 2449.696 kb on - strand, within ABID97_RS11860 at 2449.863 kb on + strand, within ABID97_RS11860 at 2449.947 kb on + strand, within ABID97_RS11860
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 2,447,847 + -0.3 2,448,177 - ABID97_RS11855 0.21 -0.6 2,448,492 - ABID97_RS11855 0.44 -0.2 2,449,077 - ABID97_RS11855 0.86 -0.5 2,449,077 - ABID97_RS11855 0.86 +0.4 2,449,323 - +0.1 2,449,548 + ABID97_RS11860 0.21 +0.1 2,449,696 - ABID97_RS11860 0.36 +0.9 2,449,863 + ABID97_RS11860 0.51 +0.2 2,449,947 + ABID97_RS11860 0.59 -0.4
Or see this region's nucleotide sequence