Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11855

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11845 and ABID97_RS11850 overlap by 1 nucleotidesABID97_RS11850 and ABID97_RS11855 are separated by 201 nucleotidesABID97_RS11855 and ABID97_RS11860 are separated by 52 nucleotides ABID97_RS11845: ABID97_RS11845 - hypothetical protein, at 2,445,405 to 2,447,153 _RS11845 ABID97_RS11850: ABID97_RS11850 - dual specificity protein phosphatase, at 2,447,153 to 2,447,683 _RS11850 ABID97_RS11855: ABID97_RS11855 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 2,447,885 to 2,449,270 _RS11855 ABID97_RS11860: ABID97_RS11860 - UDP-glucuronic acid decarboxylase family protein, at 2,449,323 to 2,450,372 _RS11860 Position (kb) 2447 2448 2449 2450Strain fitness (log2 ratio) -1 0 1at 2447.847 kb on + strandat 2448.177 kb on - strand, within ABID97_RS11855at 2448.492 kb on - strand, within ABID97_RS11855at 2449.077 kb on - strand, within ABID97_RS11855at 2449.077 kb on - strand, within ABID97_RS11855at 2449.323 kb on - strandat 2449.548 kb on + strand, within ABID97_RS11860at 2449.696 kb on - strand, within ABID97_RS11860at 2449.863 kb on + strand, within ABID97_RS11860at 2449.947 kb on + strand, within ABID97_RS11860

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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2,447,847 + -0.3
2,448,177 - ABID97_RS11855 0.21 -0.6
2,448,492 - ABID97_RS11855 0.44 -0.2
2,449,077 - ABID97_RS11855 0.86 -0.5
2,449,077 - ABID97_RS11855 0.86 +0.4
2,449,323 - +0.1
2,449,548 + ABID97_RS11860 0.21 +0.1
2,449,696 - ABID97_RS11860 0.36 +0.9
2,449,863 + ABID97_RS11860 0.51 +0.2
2,449,947 + ABID97_RS11860 0.59 -0.4

Or see this region's nucleotide sequence