Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11490

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11485 and ABID97_RS11490 are separated by 153 nucleotidesABID97_RS11490 and ABID97_RS11495 are separated by 174 nucleotides ABID97_RS11485: ABID97_RS11485 - tannase/feruloyl esterase family alpha/beta hydrolase, at 2,369,323 to 2,371,095 _RS11485 ABID97_RS11490: ABID97_RS11490 - helix-turn-helix transcriptional regulator, at 2,371,249 to 2,372,022 _RS11490 ABID97_RS11495: ABID97_RS11495 - indoleacetamide hydrolase, at 2,372,197 to 2,373,603 _RS11495 Position (kb) 2371 2372 2373Strain fitness (log2 ratio) -2 -1 0 1at 2370.780 kb on + strand, within ABID97_RS11485at 2371.117 kb on + strandat 2371.239 kb on - strandat 2371.239 kb on - strandat 2371.251 kb on - strandat 2371.892 kb on + strand, within ABID97_RS11490at 2371.893 kb on - strand, within ABID97_RS11490at 2371.893 kb on - strand, within ABID97_RS11490at 2372.068 kb on - strandat 2372.139 kb on + strandat 2372.166 kb on - strandat 2372.321 kb on - strandat 2372.543 kb on + strand, within ABID97_RS11495at 2372.544 kb on - strand, within ABID97_RS11495

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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2,370,780 + ABID97_RS11485 0.82 +1.3
2,371,117 + -1.2
2,371,239 - -0.6
2,371,239 - -1.8
2,371,251 - +0.5
2,371,892 + ABID97_RS11490 0.83 +0.8
2,371,893 - ABID97_RS11490 0.83 -0.2
2,371,893 - ABID97_RS11490 0.83 -0.2
2,372,068 - -0.7
2,372,139 + +0.4
2,372,166 - -0.1
2,372,321 - +0.1
2,372,543 + ABID97_RS11495 0.25 +0.3
2,372,544 - ABID97_RS11495 0.25 -1.6

Or see this region's nucleotide sequence