Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08860

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08855 and ABID97_RS08860 overlap by 4 nucleotidesABID97_RS08860 and ABID97_RS08865 are separated by 16 nucleotidesABID97_RS08865 and ABID97_RS08870 overlap by 4 nucleotides ABID97_RS08855: ABID97_RS08855 - thiolase family protein, at 1,855,264 to 1,856,436 _RS08855 ABID97_RS08860: ABID97_RS08860 - SDR family NAD(P)-dependent oxidoreductase, at 1,856,433 to 1,857,686 _RS08860 ABID97_RS08865: ABID97_RS08865 - cyclase family protein, at 1,857,703 to 1,858,516 _RS08865 ABID97_RS08870: ABID97_RS08870 - SDR family oxidoreductase, at 1,858,513 to 1,859,244 _RS08870 Position (kb) 1856 1857 1858Strain fitness (log2 ratio) -1 0 1 2 3at 1855.729 kb on + strand, within ABID97_RS08855at 1856.005 kb on + strand, within ABID97_RS08855at 1856.006 kb on - strand, within ABID97_RS08855at 1856.062 kb on + strand, within ABID97_RS08855at 1856.063 kb on - strand, within ABID97_RS08855at 1856.111 kb on - strand, within ABID97_RS08855at 1856.120 kb on - strand, within ABID97_RS08855at 1856.599 kb on - strand, within ABID97_RS08860at 1856.891 kb on + strand, within ABID97_RS08860at 1857.261 kb on + strand, within ABID97_RS08860at 1857.262 kb on - strand, within ABID97_RS08860at 1857.367 kb on - strand, within ABID97_RS08860at 1857.367 kb on - strand, within ABID97_RS08860at 1858.200 kb on - strand, within ABID97_RS08865at 1858.358 kb on + strand, within ABID97_RS08865at 1858.361 kb on + strand, within ABID97_RS08865at 1858.361 kb on + strand, within ABID97_RS08865

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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1,855,729 + ABID97_RS08855 0.40 +1.6
1,856,005 + ABID97_RS08855 0.63 +1.5
1,856,006 - ABID97_RS08855 0.63 +1.0
1,856,062 + ABID97_RS08855 0.68 +1.3
1,856,063 - ABID97_RS08855 0.68 +1.4
1,856,111 - ABID97_RS08855 0.72 +0.1
1,856,120 - ABID97_RS08855 0.73 +0.8
1,856,599 - ABID97_RS08860 0.13 +1.1
1,856,891 + ABID97_RS08860 0.37 +2.8
1,857,261 + ABID97_RS08860 0.66 +0.9
1,857,262 - ABID97_RS08860 0.66 +1.8
1,857,367 - ABID97_RS08860 0.74 +1.0
1,857,367 - ABID97_RS08860 0.74 +0.9
1,858,200 - ABID97_RS08865 0.61 +1.1
1,858,358 + ABID97_RS08865 0.80 -0.2
1,858,361 + ABID97_RS08865 0.81 +0.7
1,858,361 + ABID97_RS08865 0.81 +1.2

Or see this region's nucleotide sequence