Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06785 and ABID97_RS06790 overlap by 1 nucleotides ABID97_RS06790 and ABID97_RS06795 overlap by 4 nucleotides ABID97_RS06795 and ABID97_RS06800 are separated by 20 nucleotides ABID97_RS06800 and ABID97_RS06805 are separated by 21 nucleotides
ABID97_RS06785: ABID97_RS06785 - hypothetical protein, at 1,432,775 to 1,432,900
_RS06785
ABID97_RS06790: ABID97_RS06790 - DUF4123 domain-containing protein, at 1,432,900 to 1,433,868
_RS06790
ABID97_RS06795: ABID97_RS06795 - DUF3304 domain-containing protein, at 1,433,865 to 1,434,446
_RS06795
ABID97_RS06800: ABID97_RS06800 - DUF3304 domain-containing protein, at 1,434,467 to 1,435,048
_RS06800
ABID97_RS06805: ABID97_RS06805 - DUF3304 domain-containing protein, at 1,435,070 to 1,435,651
_RS06805
Position (kb)
1433
1434
1435 Strain fitness (log2 ratio)
-1
0
1 at 1432.912 kb on + strand at 1432.913 kb on - strand at 1432.913 kb on - strand at 1432.916 kb on + strand at 1432.916 kb on + strand at 1432.917 kb on - strand at 1432.917 kb on - strand at 1433.001 kb on + strand, within ABID97_RS06790 at 1433.002 kb on - strand, within ABID97_RS06790 at 1433.005 kb on + strand, within ABID97_RS06790 at 1433.005 kb on + strand, within ABID97_RS06790 at 1433.005 kb on + strand, within ABID97_RS06790 at 1433.005 kb on + strand, within ABID97_RS06790 at 1433.005 kb on + strand, within ABID97_RS06790 at 1433.006 kb on - strand, within ABID97_RS06790 at 1433.006 kb on - strand, within ABID97_RS06790 at 1433.006 kb on - strand, within ABID97_RS06790 at 1433.006 kb on - strand, within ABID97_RS06790 at 1433.006 kb on - strand, within ABID97_RS06790 at 1433.006 kb on - strand, within ABID97_RS06790 at 1433.006 kb on - strand, within ABID97_RS06790 at 1433.111 kb on - strand, within ABID97_RS06790 at 1433.244 kb on - strand, within ABID97_RS06790 at 1433.655 kb on + strand, within ABID97_RS06790 at 1433.656 kb on - strand, within ABID97_RS06790 at 1434.207 kb on + strand, within ABID97_RS06795 at 1434.208 kb on - strand, within ABID97_RS06795 at 1434.309 kb on + strand, within ABID97_RS06795 at 1434.310 kb on - strand, within ABID97_RS06795 at 1434.379 kb on - strand, within ABID97_RS06795 at 1434.445 kb on - strand at 1434.678 kb on - strand, within ABID97_RS06800 at 1434.678 kb on - strand, within ABID97_RS06800 at 1434.680 kb on + strand, within ABID97_RS06800 at 1434.680 kb on + strand, within ABID97_RS06800 at 1434.680 kb on + strand, within ABID97_RS06800 at 1434.680 kb on + strand, within ABID97_RS06800 at 1434.680 kb on + strand, within ABID97_RS06800 at 1434.912 kb on - strand, within ABID97_RS06800 at 1434.931 kb on - strand, within ABID97_RS06800 at 1435.175 kb on - strand, within ABID97_RS06805 at 1435.429 kb on + strand, within ABID97_RS06805
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 1,432,912 + -0.4 1,432,913 - -0.7 1,432,913 - +0.2 1,432,916 + -0.1 1,432,916 + -0.2 1,432,917 - -0.3 1,432,917 - +0.2 1,433,001 + ABID97_RS06790 0.10 -0.5 1,433,002 - ABID97_RS06790 0.11 -0.1 1,433,005 + ABID97_RS06790 0.11 +0.3 1,433,005 + ABID97_RS06790 0.11 -0.6 1,433,005 + ABID97_RS06790 0.11 -0.1 1,433,005 + ABID97_RS06790 0.11 -0.1 1,433,005 + ABID97_RS06790 0.11 -0.1 1,433,006 - ABID97_RS06790 0.11 -0.3 1,433,006 - ABID97_RS06790 0.11 +0.5 1,433,006 - ABID97_RS06790 0.11 -0.2 1,433,006 - ABID97_RS06790 0.11 -0.9 1,433,006 - ABID97_RS06790 0.11 +0.2 1,433,006 - ABID97_RS06790 0.11 -0.1 1,433,006 - ABID97_RS06790 0.11 -0.0 1,433,111 - ABID97_RS06790 0.22 +0.1 1,433,244 - ABID97_RS06790 0.36 -0.2 1,433,655 + ABID97_RS06790 0.78 -0.4 1,433,656 - ABID97_RS06790 0.78 +0.1 1,434,207 + ABID97_RS06795 0.59 -0.5 1,434,208 - ABID97_RS06795 0.59 -0.3 1,434,309 + ABID97_RS06795 0.76 -1.0 1,434,310 - ABID97_RS06795 0.76 -0.8 1,434,379 - ABID97_RS06795 0.88 +0.0 1,434,445 - -1.2 1,434,678 - ABID97_RS06800 0.36 -0.3 1,434,678 - ABID97_RS06800 0.36 -0.2 1,434,680 + ABID97_RS06800 0.37 -0.4 1,434,680 + ABID97_RS06800 0.37 -0.1 1,434,680 + ABID97_RS06800 0.37 -0.0 1,434,680 + ABID97_RS06800 0.37 -0.1 1,434,680 + ABID97_RS06800 0.37 +0.5 1,434,912 - ABID97_RS06800 0.76 +0.3 1,434,931 - ABID97_RS06800 0.80 -0.2 1,435,175 - ABID97_RS06805 0.18 +0.3 1,435,429 + ABID97_RS06805 0.62 +0.0
Or see this region's nucleotide sequence