Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04255

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04250 and ABID97_RS04255 are separated by 142 nucleotidesABID97_RS04255 and ABID97_RS04260 are separated by 71 nucleotidesABID97_RS04260 and ABID97_RS04265 are separated by 22 nucleotides ABID97_RS04250: ABID97_RS04250 - LysR family transcriptional regulator, at 872,916 to 873,812 _RS04250 ABID97_RS04255: ABID97_RS04255 - gentisate 1,2-dioxygenase, at 873,955 to 875,034 _RS04255 ABID97_RS04260: ABID97_RS04260 - fumarylacetoacetate hydrolase family protein, at 875,106 to 875,813 _RS04260 ABID97_RS04265: ABID97_RS04265 - 3-hydroxybenzoate 6-monooxygenase, at 875,836 to 877,089 _RS04265 Position (kb) 873 874 875 876Strain fitness (log2 ratio) -2 -1 0 1at 873.010 kb on + strand, within ABID97_RS04250at 873.010 kb on + strand, within ABID97_RS04250at 873.011 kb on - strand, within ABID97_RS04250at 873.011 kb on - strand, within ABID97_RS04250at 873.337 kb on + strand, within ABID97_RS04250at 873.338 kb on - strand, within ABID97_RS04250at 873.591 kb on + strand, within ABID97_RS04250at 873.591 kb on + strand, within ABID97_RS04250at 873.592 kb on - strand, within ABID97_RS04250at 873.625 kb on + strand, within ABID97_RS04250at 873.626 kb on - strand, within ABID97_RS04250at 873.767 kb on - strandat 873.767 kb on - strandat 873.767 kb on - strandat 873.767 kb on - strandat 873.767 kb on - strandat 873.886 kb on + strandat 873.887 kb on - strandat 873.887 kb on - strandat 873.890 kb on - strandat 874.012 kb on + strandat 874.016 kb on - strandat 874.117 kb on + strand, within ABID97_RS04255at 874.117 kb on + strand, within ABID97_RS04255at 874.372 kb on + strand, within ABID97_RS04255at 874.372 kb on + strand, within ABID97_RS04255at 874.373 kb on - strand, within ABID97_RS04255at 874.636 kb on + strand, within ABID97_RS04255at 874.636 kb on + strand, within ABID97_RS04255at 874.832 kb on - strand, within ABID97_RS04255at 875.205 kb on + strand, within ABID97_RS04260at 875.206 kb on - strand, within ABID97_RS04260at 875.206 kb on - strand, within ABID97_RS04260at 875.349 kb on + strand, within ABID97_RS04260at 875.349 kb on + strand, within ABID97_RS04260at 875.349 kb on + strand, within ABID97_RS04260at 875.349 kb on + strand, within ABID97_RS04260at 875.349 kb on + strand, within ABID97_RS04260at 875.350 kb on - strand, within ABID97_RS04260at 875.351 kb on - strand, within ABID97_RS04260

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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873,010 + ABID97_RS04250 0.10 +1.1
873,010 + ABID97_RS04250 0.10 +1.3
873,011 - ABID97_RS04250 0.11 +1.4
873,011 - ABID97_RS04250 0.11 +0.8
873,337 + ABID97_RS04250 0.47 +1.2
873,338 - ABID97_RS04250 0.47 -0.2
873,591 + ABID97_RS04250 0.75 +0.0
873,591 + ABID97_RS04250 0.75 +0.8
873,592 - ABID97_RS04250 0.75 -2.4
873,625 + ABID97_RS04250 0.79 +1.0
873,626 - ABID97_RS04250 0.79 +0.8
873,767 - +0.8
873,767 - +1.3
873,767 - +1.2
873,767 - -0.0
873,767 - +1.2
873,886 + +0.8
873,887 - +0.0
873,887 - -1.8
873,890 - -0.9
874,012 + +0.1
874,016 - +0.4
874,117 + ABID97_RS04255 0.15 +1.4
874,117 + ABID97_RS04255 0.15 +0.9
874,372 + ABID97_RS04255 0.39 +0.3
874,372 + ABID97_RS04255 0.39 +1.0
874,373 - ABID97_RS04255 0.39 +0.9
874,636 + ABID97_RS04255 0.63 -0.3
874,636 + ABID97_RS04255 0.63 +0.5
874,832 - ABID97_RS04255 0.81 +0.1
875,205 + ABID97_RS04260 0.14 +1.0
875,206 - ABID97_RS04260 0.14 +0.1
875,206 - ABID97_RS04260 0.14 +0.2
875,349 + ABID97_RS04260 0.34 +0.3
875,349 + ABID97_RS04260 0.34 +0.2
875,349 + ABID97_RS04260 0.34 +0.2
875,349 + ABID97_RS04260 0.34 +0.2
875,349 + ABID97_RS04260 0.34 +1.5
875,350 - ABID97_RS04260 0.34 -0.1
875,351 - ABID97_RS04260 0.35 +0.2

Or see this region's nucleotide sequence