Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03505 and ABID97_RS03510 are separated by 3 nucleotides ABID97_RS03510 and ABID97_RS03515 are separated by 21 nucleotides ABID97_RS03515 and ABID97_RS03520 are separated by 34 nucleotides
ABID97_RS03505: ABID97_RS03505 - 6-hydroxynicotinate reductase, at 714,543 to 716,159
_RS03505
ABID97_RS03510: ABID97_RS03510 - UPF0280 family protein, at 716,163 to 717,065
_RS03510
ABID97_RS03515: ABID97_RS03515 - amino acid synthesis family protein, at 717,087 to 717,728
_RS03515
ABID97_RS03520: ABID97_RS03520 - amino acid synthesis family protein, at 717,763 to 718,347
_RS03520
Position (kb) 716
717
718 Strain fitness (log2 ratio) -1
0
1 at 715.650 kb on + strand, within ABID97_RS03505 at 715.650 kb on + strand, within ABID97_RS03505 at 715.651 kb on - strand, within ABID97_RS03505 at 715.875 kb on + strand, within ABID97_RS03505 at 715.875 kb on + strand, within ABID97_RS03505 at 715.876 kb on - strand, within ABID97_RS03505 at 715.876 kb on - strand, within ABID97_RS03505 at 716.001 kb on + strand at 716.250 kb on - strand at 716.253 kb on + strand at 716.254 kb on - strand, within ABID97_RS03510 at 716.571 kb on + strand, within ABID97_RS03510 at 716.571 kb on + strand, within ABID97_RS03510 at 717.008 kb on - strand at 717.055 kb on + strand at 717.094 kb on - strand at 717.096 kb on - strand at 717.097 kb on + strand at 717.098 kb on - strand at 717.321 kb on + strand, within ABID97_RS03515 at 717.438 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.567 kb on + strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515 at 717.568 kb on - strand, within ABID97_RS03515
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 715,650 + ABID97_RS03505 0.68 -0.3 715,650 + ABID97_RS03505 0.68 +0.3 715,651 - ABID97_RS03505 0.69 +0.3 715,875 + ABID97_RS03505 0.82 +1.2 715,875 + ABID97_RS03505 0.82 +0.4 715,876 - ABID97_RS03505 0.82 +0.3 715,876 - ABID97_RS03505 0.82 -0.3 716,001 + +0.5 716,250 - +0.4 716,253 + +0.3 716,254 - ABID97_RS03510 0.10 +0.5 716,571 + ABID97_RS03510 0.45 -0.2 716,571 + ABID97_RS03510 0.45 +0.3 717,008 - -0.0 717,055 + -0.2 717,094 - -0.2 717,096 - -0.1 717,097 + +0.5 717,098 - +0.1 717,321 + ABID97_RS03515 0.36 -0.4 717,438 + ABID97_RS03515 0.55 -1.0 717,567 + ABID97_RS03515 0.75 -1.2 717,567 + ABID97_RS03515 0.75 -0.4 717,567 + ABID97_RS03515 0.75 -0.9 717,567 + ABID97_RS03515 0.75 -0.7 717,568 - ABID97_RS03515 0.75 +0.4 717,568 - ABID97_RS03515 0.75 +0.5 717,568 - ABID97_RS03515 0.75 -0.0 717,568 - ABID97_RS03515 0.75 +0.2
Or see this region's nucleotide sequence