Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03000

Experiment: V1_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02990 and ABID97_RS02995 are separated by 33 nucleotidesABID97_RS02995 and ABID97_RS03000 are separated by 3 nucleotidesABID97_RS03000 and ABID97_RS03005 are separated by 54 nucleotidesABID97_RS03005 and ABID97_RS03010 are separated by 106 nucleotides ABID97_RS02990: ABID97_RS02990 - alpha/beta fold hydrolase, at 606,673 to 607,593 _RS02990 ABID97_RS02995: ABID97_RS02995 - cell division topological specificity factor MinE, at 607,627 to 607,905 _RS02995 ABID97_RS03000: ABID97_RS03000 - septum site-determining protein MinD, at 607,909 to 608,724 _RS03000 ABID97_RS03005: ABID97_RS03005 - septum site-determining protein MinC, at 608,779 to 609,552 _RS03005 ABID97_RS03010: ABID97_RS03010 - solute carrier family 23 protein, at 609,659 to 610,960 _RS03010 Position (kb) 607 608 609Strain fitness (log2 ratio) -2 -1 0 1at 606.925 kb on + strand, within ABID97_RS02990at 606.926 kb on - strand, within ABID97_RS02990at 606.926 kb on - strand, within ABID97_RS02990at 607.132 kb on + strand, within ABID97_RS02990at 607.132 kb on + strand, within ABID97_RS02990at 607.132 kb on + strand, within ABID97_RS02990at 607.132 kb on + strand, within ABID97_RS02990at 607.132 kb on + strand, within ABID97_RS02990at 607.133 kb on - strand, within ABID97_RS02990at 607.133 kb on - strand, within ABID97_RS02990at 608.009 kb on + strand, within ABID97_RS03000at 608.009 kb on + strand, within ABID97_RS03000at 608.010 kb on - strand, within ABID97_RS03000at 608.177 kb on + strand, within ABID97_RS03000at 608.177 kb on + strand, within ABID97_RS03000at 608.177 kb on + strand, within ABID97_RS03000at 608.177 kb on + strand, within ABID97_RS03000at 608.284 kb on + strand, within ABID97_RS03000at 608.285 kb on - strand, within ABID97_RS03000at 608.378 kb on + strand, within ABID97_RS03000at 608.378 kb on + strand, within ABID97_RS03000at 608.379 kb on - strand, within ABID97_RS03000at 608.379 kb on - strand, within ABID97_RS03000at 608.379 kb on - strand, within ABID97_RS03000at 608.379 kb on - strand, within ABID97_RS03000at 608.552 kb on + strand, within ABID97_RS03000at 608.552 kb on + strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.553 kb on - strand, within ABID97_RS03000at 608.818 kb on + strandat 608.819 kb on - strandat 608.819 kb on - strandat 608.819 kb on - strandat 608.819 kb on - strandat 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.873 kb on + strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.874 kb on - strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.978 kb on + strand, within ABID97_RS03005at 608.979 kb on - strand, within ABID97_RS03005at 609.059 kb on + strand, within ABID97_RS03005at 609.475 kb on + strandat 609.645 kb on + strandat 609.645 kb on + strandat 609.645 kb on + strandat 609.706 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V1_10
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606,925 + ABID97_RS02990 0.27 +0.7
606,926 - ABID97_RS02990 0.27 +0.0
606,926 - ABID97_RS02990 0.27 +0.5
607,132 + ABID97_RS02990 0.50 -1.3
607,132 + ABID97_RS02990 0.50 +0.1
607,132 + ABID97_RS02990 0.50 +0.0
607,132 + ABID97_RS02990 0.50 +0.2
607,132 + ABID97_RS02990 0.50 -2.0
607,133 - ABID97_RS02990 0.50 -0.3
607,133 - ABID97_RS02990 0.50 -0.3
608,009 + ABID97_RS03000 0.12 -0.3
608,009 + ABID97_RS03000 0.12 +0.0
608,010 - ABID97_RS03000 0.12 -0.3
608,177 + ABID97_RS03000 0.33 +0.2
608,177 + ABID97_RS03000 0.33 -1.6
608,177 + ABID97_RS03000 0.33 -0.3
608,177 + ABID97_RS03000 0.33 -0.2
608,284 + ABID97_RS03000 0.46 -0.7
608,285 - ABID97_RS03000 0.46 -0.6
608,378 + ABID97_RS03000 0.57 -0.0
608,378 + ABID97_RS03000 0.57 -0.2
608,379 - ABID97_RS03000 0.58 -0.5
608,379 - ABID97_RS03000 0.58 -0.7
608,379 - ABID97_RS03000 0.58 -0.5
608,379 - ABID97_RS03000 0.58 +0.3
608,552 + ABID97_RS03000 0.79 -0.5
608,552 + ABID97_RS03000 0.79 -0.4
608,553 - ABID97_RS03000 0.79 -2.0
608,553 - ABID97_RS03000 0.79 -0.7
608,553 - ABID97_RS03000 0.79 -1.6
608,553 - ABID97_RS03000 0.79 -0.4
608,553 - ABID97_RS03000 0.79 -0.9
608,818 + +0.7
608,819 - +0.7
608,819 - +0.7
608,819 - -0.5
608,819 - -0.1
608,873 + ABID97_RS03005 0.12 -0.5
608,873 + ABID97_RS03005 0.12 +0.3
608,873 + ABID97_RS03005 0.12 +0.8
608,873 + ABID97_RS03005 0.12 -0.6
608,873 + ABID97_RS03005 0.12 -0.9
608,874 - ABID97_RS03005 0.12 -0.0
608,874 - ABID97_RS03005 0.12 -0.3
608,874 - ABID97_RS03005 0.12 -0.1
608,874 - ABID97_RS03005 0.12 -0.0
608,978 + ABID97_RS03005 0.26 -1.7
608,978 + ABID97_RS03005 0.26 -0.6
608,978 + ABID97_RS03005 0.26 -0.4
608,979 - ABID97_RS03005 0.26 -0.1
609,059 + ABID97_RS03005 0.36 -0.4
609,475 + -0.7
609,645 + -0.3
609,645 + -0.6
609,645 + -0.9
609,706 - -2.3

Or see this region's nucleotide sequence