Experiment: V1_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01870 and ABID97_RS01875 are separated by 150 nucleotides ABID97_RS01875 and ABID97_RS01880 overlap by 10 nucleotides ABID97_RS01880 and ABID97_RS01885 overlap by 17 nucleotides
ABID97_RS01870: ABID97_RS01870 - MFS transporter, at 369,711 to 371,339
_RS01870
ABID97_RS01875: ABID97_RS01875 - creatininase family protein, at 371,490 to 372,311
_RS01875
ABID97_RS01880: ABID97_RS01880 - ABC transporter ATP-binding protein, at 372,302 to 373,096
_RS01880
ABID97_RS01885: ABID97_RS01885 - ABC transporter permease, at 373,080 to 373,970
_RS01885
Position (kb) 371
372
373 Strain fitness (log2 ratio) -1
0
1 at 370.813 kb on - strand, within ABID97_RS01870 at 370.813 kb on - strand, within ABID97_RS01870 at 371.064 kb on + strand, within ABID97_RS01870 at 371.064 kb on + strand, within ABID97_RS01870 at 371.064 kb on + strand, within ABID97_RS01870 at 371.064 kb on + strand, within ABID97_RS01870 at 371.065 kb on - strand, within ABID97_RS01870 at 371.187 kb on + strand at 371.188 kb on - strand at 371.188 kb on - strand at 371.406 kb on - strand at 371.409 kb on + strand at 371.410 kb on - strand at 371.410 kb on - strand at 371.410 kb on - strand at 371.410 kb on - strand at 371.445 kb on - strand at 371.481 kb on + strand at 371.844 kb on + strand, within ABID97_RS01875 at 371.844 kb on + strand, within ABID97_RS01875 at 371.844 kb on + strand, within ABID97_RS01875 at 371.845 kb on - strand, within ABID97_RS01875 at 371.938 kb on - strand, within ABID97_RS01875 at 372.042 kb on + strand, within ABID97_RS01875 at 372.042 kb on + strand, within ABID97_RS01875 at 372.248 kb on - strand at 372.713 kb on + strand, within ABID97_RS01880 at 372.921 kb on - strand, within ABID97_RS01880 at 373.284 kb on + strand, within ABID97_RS01885 at 373.284 kb on + strand, within ABID97_RS01885 at 373.285 kb on - strand, within ABID97_RS01885 at 373.285 kb on - strand, within ABID97_RS01885 at 373.285 kb on - strand, within ABID97_RS01885
Per-strain Table
Position Strand Gene LocusTag Fraction V1_10 remove 370,813 - ABID97_RS01870 0.68 +0.0 370,813 - ABID97_RS01870 0.68 -0.2 371,064 + ABID97_RS01870 0.83 +0.2 371,064 + ABID97_RS01870 0.83 +0.4 371,064 + ABID97_RS01870 0.83 +0.2 371,064 + ABID97_RS01870 0.83 +0.7 371,065 - ABID97_RS01870 0.83 -0.6 371,187 + +0.5 371,188 - +0.1 371,188 - +1.4 371,406 - +0.3 371,409 + -1.6 371,410 - -0.2 371,410 - -0.1 371,410 - -0.4 371,410 - -0.3 371,445 - +0.4 371,481 + -1.6 371,844 + ABID97_RS01875 0.43 +0.2 371,844 + ABID97_RS01875 0.43 -0.3 371,844 + ABID97_RS01875 0.43 -0.8 371,845 - ABID97_RS01875 0.43 -0.2 371,938 - ABID97_RS01875 0.55 -1.4 372,042 + ABID97_RS01875 0.67 -0.4 372,042 + ABID97_RS01875 0.67 -1.5 372,248 - -0.5 372,713 + ABID97_RS01880 0.52 -0.2 372,921 - ABID97_RS01880 0.78 +0.4 373,284 + ABID97_RS01885 0.23 -0.2 373,284 + ABID97_RS01885 0.23 -0.1 373,285 - ABID97_RS01885 0.23 -1.3 373,285 - ABID97_RS01885 0.23 +0.1 373,285 - ABID97_RS01885 0.23 -0.6
Or see this region's nucleotide sequence