Strain Fitness in Agrobacterium fabrum C58 around Atu0797

Experiment: R2A with Kanamycin sulfate 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0795 and Atu0796 are separated by 51 nucleotidesAtu0796 and Atu0797 are separated by 48 nucleotidesAtu0797 and Atu0798 overlap by 4 nucleotides Atu0795: Atu0795 - hypothetical protein, at 792,052 to 792,285 Atu0795 Atu0796: Atu0796 - putative peptidase, at 792,337 to 793,092 Atu0796 Atu0797: Atu0797 - hydrolase, at 793,141 to 793,752 Atu0797 Atu0798: Atu0798 - A/G-specific adenine glycosylase, at 793,749 to 794,852 Atu0798 Position (kb) 793 794Strain fitness (log2 ratio) -2 -1 0 1at 792.178 kb on - strand, within Atu0795at 792.180 kb on + strand, within Atu0795at 792.194 kb on + strand, within Atu0795at 792.267 kb on - strandat 792.269 kb on - strandat 792.269 kb on - strandat 792.272 kb on + strandat 792.328 kb on - strandat 792.387 kb on + strandat 792.395 kb on + strandat 792.395 kb on - strandat 792.434 kb on + strand, within Atu0796at 792.488 kb on + strand, within Atu0796at 792.488 kb on + strand, within Atu0796at 792.565 kb on - strand, within Atu0796at 792.651 kb on - strand, within Atu0796at 792.692 kb on - strand, within Atu0796at 792.694 kb on + strand, within Atu0796at 792.951 kb on + strand, within Atu0796at 792.976 kb on - strand, within Atu0796at 792.981 kb on - strand, within Atu0796at 793.098 kb on + strandat 793.098 kb on + strandat 793.106 kb on - strandat 793.106 kb on - strandat 793.106 kb on - strandat 793.120 kb on - strandat 793.139 kb on + strandat 793.139 kb on + strandat 793.146 kb on + strandat 793.146 kb on - strandat 793.187 kb on - strandat 793.220 kb on + strand, within Atu0797at 793.220 kb on + strand, within Atu0797at 793.350 kb on + strand, within Atu0797at 793.350 kb on + strand, within Atu0797at 793.350 kb on + strand, within Atu0797at 793.384 kb on - strand, within Atu0797at 793.448 kb on + strand, within Atu0797at 793.482 kb on + strand, within Atu0797at 793.484 kb on + strand, within Atu0797at 793.490 kb on - strand, within Atu0797at 793.490 kb on - strand, within Atu0797at 793.564 kb on + strand, within Atu0797at 793.612 kb on + strand, within Atu0797at 793.705 kb on + strandat 793.850 kb on + strandat 793.869 kb on - strand, within Atu0798at 793.896 kb on - strand, within Atu0798at 793.896 kb on - strand, within Atu0798at 793.896 kb on - strand, within Atu0798at 793.896 kb on - strand, within Atu0798at 793.910 kb on - strand, within Atu0798at 793.912 kb on + strand, within Atu0798at 793.930 kb on - strand, within Atu0798at 793.932 kb on + strand, within Atu0798at 793.940 kb on - strand, within Atu0798at 793.980 kb on + strand, within Atu0798at 793.990 kb on - strand, within Atu0798at 793.995 kb on - strand, within Atu0798at 794.002 kb on - strand, within Atu0798at 794.020 kb on + strand, within Atu0798at 794.028 kb on - strand, within Atu0798at 794.050 kb on - strand, within Atu0798at 794.058 kb on - strand, within Atu0798at 794.084 kb on + strand, within Atu0798at 794.097 kb on - strand, within Atu0798at 794.098 kb on + strand, within Atu0798at 794.098 kb on + strand, within Atu0798at 794.117 kb on + strand, within Atu0798at 794.122 kb on + strand, within Atu0798at 794.130 kb on - strand, within Atu0798at 794.200 kb on - strand, within Atu0798at 794.200 kb on - strand, within Atu0798at 794.216 kb on - strand, within Atu0798at 794.223 kb on - strand, within Atu0798at 794.295 kb on + strand, within Atu0798at 794.357 kb on - strand, within Atu0798at 794.357 kb on - strand, within Atu0798at 794.403 kb on + strand, within Atu0798at 794.432 kb on - strand, within Atu0798at 794.488 kb on - strand, within Atu0798at 794.579 kb on + strand, within Atu0798at 794.587 kb on - strand, within Atu0798at 794.593 kb on + strand, within Atu0798at 794.681 kb on + strand, within Atu0798

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Kanamycin sulfate 0.02 mM
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792,178 - Atu0795 0.54 -1.4
792,180 + Atu0795 0.55 -1.9
792,194 + Atu0795 0.61 -0.1
792,267 - +0.4
792,269 - -1.0
792,269 - -0.1
792,272 + -0.3
792,328 - +0.3
792,387 + +0.2
792,395 + -2.1
792,395 - -0.0
792,434 + Atu0796 0.13 +0.7
792,488 + Atu0796 0.20 -0.1
792,488 + Atu0796 0.20 +0.1
792,565 - Atu0796 0.30 +0.6
792,651 - Atu0796 0.42 -0.4
792,692 - Atu0796 0.47 -0.7
792,694 + Atu0796 0.47 -0.9
792,951 + Atu0796 0.81 -0.7
792,976 - Atu0796 0.85 -0.4
792,981 - Atu0796 0.85 -0.5
793,098 + +0.2
793,098 + -0.0
793,106 - -0.8
793,106 - +0.0
793,106 - +0.4
793,120 - -0.1
793,139 + +0.4
793,139 + -0.1
793,146 + -1.0
793,146 - -0.4
793,187 - -0.5
793,220 + Atu0797 0.13 +0.6
793,220 + Atu0797 0.13 +0.0
793,350 + Atu0797 0.34 -0.6
793,350 + Atu0797 0.34 -0.2
793,350 + Atu0797 0.34 +0.3
793,384 - Atu0797 0.40 +0.1
793,448 + Atu0797 0.50 +0.2
793,482 + Atu0797 0.56 -0.1
793,484 + Atu0797 0.56 -0.4
793,490 - Atu0797 0.57 -0.4
793,490 - Atu0797 0.57 +0.4
793,564 + Atu0797 0.69 -0.2
793,612 + Atu0797 0.77 -0.7
793,705 + +0.9
793,850 + -0.7
793,869 - Atu0798 0.11 +0.5
793,896 - Atu0798 0.13 +0.4
793,896 - Atu0798 0.13 -0.1
793,896 - Atu0798 0.13 +0.2
793,896 - Atu0798 0.13 +1.2
793,910 - Atu0798 0.15 +0.2
793,912 + Atu0798 0.15 -0.2
793,930 - Atu0798 0.16 -1.3
793,932 + Atu0798 0.17 -0.3
793,940 - Atu0798 0.17 -0.3
793,980 + Atu0798 0.21 +0.4
793,990 - Atu0798 0.22 +0.7
793,995 - Atu0798 0.22 -0.2
794,002 - Atu0798 0.23 +0.3
794,020 + Atu0798 0.25 -0.6
794,028 - Atu0798 0.25 +0.7
794,050 - Atu0798 0.27 -0.3
794,058 - Atu0798 0.28 +0.3
794,084 + Atu0798 0.30 -0.8
794,097 - Atu0798 0.32 +0.1
794,098 + Atu0798 0.32 -0.3
794,098 + Atu0798 0.32 +0.1
794,117 + Atu0798 0.33 -0.1
794,122 + Atu0798 0.34 -0.1
794,130 - Atu0798 0.35 -0.1
794,200 - Atu0798 0.41 +0.7
794,200 - Atu0798 0.41 +0.3
794,216 - Atu0798 0.42 +0.3
794,223 - Atu0798 0.43 +0.2
794,295 + Atu0798 0.49 -0.6
794,357 - Atu0798 0.55 +0.3
794,357 - Atu0798 0.55 +0.4
794,403 + Atu0798 0.59 -0.9
794,432 - Atu0798 0.62 +1.1
794,488 - Atu0798 0.67 -0.1
794,579 + Atu0798 0.75 +0.6
794,587 - Atu0798 0.76 -0.4
794,593 + Atu0798 0.76 +0.4
794,681 + Atu0798 0.84 -0.1

Or see this region's nucleotide sequence