Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29440 and ABID97_RS29445 are separated by 42 nucleotides ABID97_RS29445 and ABID97_RS29450 are separated by 46 nucleotides ABID97_RS29450 and ABID97_RS29455 are separated by 82 nucleotides
ABID97_RS29440: ABID97_RS29440 - MoaF C-terminal domain-containing protein, at 812,030 to 812,830
_RS29440
ABID97_RS29445: ABID97_RS29445 - nuclear transport factor 2 family protein, at 812,873 to 813,262
_RS29445
ABID97_RS29450: ABID97_RS29450 - aldehyde dehydrogenase family protein, at 813,309 to 814,811
_RS29450
ABID97_RS29455: ABID97_RS29455 - ABC transporter substrate-binding protein, at 814,894 to 816,114
_RS29455
Position (kb) 813
814
815 Strain fitness (log2 ratio) -1
0
1
2 at 812.511 kb on - strand, within ABID97_RS29440 at 812.540 kb on + strand, within ABID97_RS29440 at 812.622 kb on - strand, within ABID97_RS29440 at 812.642 kb on + strand, within ABID97_RS29440 at 812.642 kb on + strand, within ABID97_RS29440 at 812.804 kb on + strand at 813.702 kb on + strand, within ABID97_RS29450 at 813.783 kb on + strand, within ABID97_RS29450 at 813.783 kb on + strand, within ABID97_RS29450 at 814.843 kb on + strand at 814.843 kb on + strand at 815.054 kb on - strand, within ABID97_RS29455 at 815.372 kb on - strand, within ABID97_RS29455
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 812,511 - ABID97_RS29440 0.60 -0.3 812,540 + ABID97_RS29440 0.64 +0.4 812,622 - ABID97_RS29440 0.74 -0.2 812,642 + ABID97_RS29440 0.76 +1.1 812,642 + ABID97_RS29440 0.76 -0.2 812,804 + +1.0 813,702 + ABID97_RS29450 0.26 +1.2 813,783 + ABID97_RS29450 0.32 +0.0 813,783 + ABID97_RS29450 0.32 -1.1 814,843 + +2.2 814,843 + -0.0 815,054 - ABID97_RS29455 0.13 +0.6 815,372 - ABID97_RS29455 0.39 +0.1
Or see this region's nucleotide sequence