Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28155 and ABID97_RS28160 are separated by 97 nucleotides ABID97_RS28160 and ABID97_RS28165 are separated by 201 nucleotides
ABID97_RS28155: ABID97_RS28155 - YihY/virulence factor BrkB family protein, at 549,797 to 550,933
_RS28155
ABID97_RS28160: ABID97_RS28160 - sensor domain-containing diguanylate cyclase, at 551,031 to 552,563
_RS28160
ABID97_RS28165: ABID97_RS28165 - tannase/feruloyl esterase family alpha/beta hydrolase, at 552,765 to 554,540
_RS28165
Position (kb) 551
552
553 Strain fitness (log2 ratio) -1
0
1 at 550.111 kb on - strand, within ABID97_RS28155 at 550.155 kb on + strand, within ABID97_RS28155 at 550.231 kb on - strand, within ABID97_RS28155 at 550.333 kb on - strand, within ABID97_RS28155 at 550.836 kb on + strand at 550.837 kb on - strand at 551.033 kb on - strand at 551.033 kb on - strand at 551.092 kb on + strand at 551.405 kb on - strand, within ABID97_RS28160 at 551.416 kb on + strand, within ABID97_RS28160 at 551.863 kb on + strand, within ABID97_RS28160 at 551.863 kb on + strand, within ABID97_RS28160 at 551.996 kb on - strand, within ABID97_RS28160 at 552.169 kb on + strand, within ABID97_RS28160 at 552.170 kb on - strand, within ABID97_RS28160 at 552.170 kb on - strand, within ABID97_RS28160 at 553.000 kb on - strand, within ABID97_RS28165 at 553.125 kb on + strand, within ABID97_RS28165 at 553.126 kb on - strand, within ABID97_RS28165 at 553.126 kb on - strand, within ABID97_RS28165 at 553.179 kb on + strand, within ABID97_RS28165 at 553.180 kb on - strand, within ABID97_RS28165 at 553.180 kb on - strand, within ABID97_RS28165 at 553.353 kb on + strand, within ABID97_RS28165 at 553.360 kb on - strand, within ABID97_RS28165 at 553.360 kb on - strand, within ABID97_RS28165 at 553.438 kb on - strand, within ABID97_RS28165
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 550,111 - ABID97_RS28155 0.28 -0.1 550,155 + ABID97_RS28155 0.31 +0.1 550,231 - ABID97_RS28155 0.38 -0.5 550,333 - ABID97_RS28155 0.47 -0.0 550,836 + +0.3 550,837 - +0.3 551,033 - -0.1 551,033 - +0.3 551,092 + +0.1 551,405 - ABID97_RS28160 0.24 +0.1 551,416 + ABID97_RS28160 0.25 +0.4 551,863 + ABID97_RS28160 0.54 -0.5 551,863 + ABID97_RS28160 0.54 -1.2 551,996 - ABID97_RS28160 0.63 -0.3 552,169 + ABID97_RS28160 0.74 -0.2 552,170 - ABID97_RS28160 0.74 +0.2 552,170 - ABID97_RS28160 0.74 -0.2 553,000 - ABID97_RS28165 0.13 -0.1 553,125 + ABID97_RS28165 0.20 -0.2 553,126 - ABID97_RS28165 0.20 +0.1 553,126 - ABID97_RS28165 0.20 +0.4 553,179 + ABID97_RS28165 0.23 +0.2 553,180 - ABID97_RS28165 0.23 +0.4 553,180 - ABID97_RS28165 0.23 -0.0 553,353 + ABID97_RS28165 0.33 +0.2 553,360 - ABID97_RS28165 0.34 -0.5 553,360 - ABID97_RS28165 0.34 +0.4 553,438 - ABID97_RS28165 0.38 +0.1
Or see this region's nucleotide sequence