Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28135 and ABID97_RS28140 are separated by 190 nucleotides ABID97_RS28140 and ABID97_RS28145 are separated by 170 nucleotides ABID97_RS28145 and ABID97_RS28150 are separated by 18 nucleotides
ABID97_RS28135: ABID97_RS28135 - alpha/beta hydrolase, at 545,918 to 546,940
_RS28135
ABID97_RS28140: ABID97_RS28140 - hypothetical protein, at 547,131 to 547,550
_RS28140
ABID97_RS28145: ABID97_RS28145 - methyltransferase domain-containing protein, at 547,721 to 548,533
_RS28145
ABID97_RS28150: ABID97_RS28150 - 3-deoxy-7-phosphoheptulonate synthase, at 548,552 to 549,679
_RS28150
Position (kb) 547
548
549 Strain fitness (log2 ratio) -2
-1
0
1
2 at 546.762 kb on + strand, within ABID97_RS28135 at 546.762 kb on + strand, within ABID97_RS28135 at 546.762 kb on + strand, within ABID97_RS28135 at 546.762 kb on + strand, within ABID97_RS28135 at 546.763 kb on - strand, within ABID97_RS28135 at 547.062 kb on + strand at 547.063 kb on - strand at 547.360 kb on + strand, within ABID97_RS28140 at 547.402 kb on + strand, within ABID97_RS28140 at 547.402 kb on + strand, within ABID97_RS28140 at 547.402 kb on + strand, within ABID97_RS28140 at 547.403 kb on - strand, within ABID97_RS28140 at 547.403 kb on - strand, within ABID97_RS28140 at 547.403 kb on - strand, within ABID97_RS28140 at 547.405 kb on + strand, within ABID97_RS28140 at 547.405 kb on + strand, within ABID97_RS28140 at 547.406 kb on - strand, within ABID97_RS28140 at 547.406 kb on - strand, within ABID97_RS28140 at 547.406 kb on - strand, within ABID97_RS28140 at 547.592 kb on + strand at 547.766 kb on + strand at 547.766 kb on + strand at 547.803 kb on - strand, within ABID97_RS28145 at 547.803 kb on - strand, within ABID97_RS28145 at 547.923 kb on - strand, within ABID97_RS28145 at 549.300 kb on + strand, within ABID97_RS28150 at 549.301 kb on - strand, within ABID97_RS28150 at 549.340 kb on - strand, within ABID97_RS28150
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 546,762 + ABID97_RS28135 0.83 +0.2 546,762 + ABID97_RS28135 0.83 +0.1 546,762 + ABID97_RS28135 0.83 -0.0 546,762 + ABID97_RS28135 0.83 -0.5 546,763 - ABID97_RS28135 0.83 -0.0 547,062 + -0.0 547,063 - +0.2 547,360 + ABID97_RS28140 0.55 -0.0 547,402 + ABID97_RS28140 0.65 +1.2 547,402 + ABID97_RS28140 0.65 +0.2 547,402 + ABID97_RS28140 0.65 -0.1 547,403 - ABID97_RS28140 0.65 -0.0 547,403 - ABID97_RS28140 0.65 -0.6 547,403 - ABID97_RS28140 0.65 +1.1 547,405 + ABID97_RS28140 0.65 +0.1 547,405 + ABID97_RS28140 0.65 -0.3 547,406 - ABID97_RS28140 0.65 +2.4 547,406 - ABID97_RS28140 0.65 +0.5 547,406 - ABID97_RS28140 0.65 -1.4 547,592 + -0.1 547,766 + +0.3 547,766 + -0.0 547,803 - ABID97_RS28145 0.10 -0.0 547,803 - ABID97_RS28145 0.10 -0.9 547,923 - ABID97_RS28145 0.25 -0.6 549,300 + ABID97_RS28150 0.66 -2.6 549,301 - ABID97_RS28150 0.66 -0.3 549,340 - ABID97_RS28150 0.70 +0.1
Or see this region's nucleotide sequence