Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25570 and ABID97_RS25575 are separated by 110 nucleotides ABID97_RS25575 and ABID97_RS25580 overlap by 38 nucleotides ABID97_RS25580 and ABID97_RS25585 are separated by 240 nucleotides
ABID97_RS25570: ABID97_RS25570 - alkene reductase, at 33,987 to 35,048
_RS25570
ABID97_RS25575: ABID97_RS25575 - LysR family transcriptional regulator, at 35,159 to 36,034
_RS25575
ABID97_RS25580: ABID97_RS25580 - nucleotidyltransferase family protein, at 35,997 to 36,596
_RS25580
ABID97_RS25585: ABID97_RS25585 - DUF6662 family protein, at 36,837 to 37,754
_RS25585
Position (kb) 35
36
37 Strain fitness (log2 ratio) -1
0
1
2 at 34.271 kb on - strand, within ABID97_RS25570 at 34.307 kb on - strand, within ABID97_RS25570 at 34.312 kb on + strand, within ABID97_RS25570 at 34.831 kb on + strand, within ABID97_RS25570 at 34.832 kb on - strand, within ABID97_RS25570 at 34.853 kb on - strand, within ABID97_RS25570 at 34.922 kb on - strand, within ABID97_RS25570 at 34.924 kb on + strand, within ABID97_RS25570 at 34.924 kb on + strand, within ABID97_RS25570 at 34.925 kb on - strand, within ABID97_RS25570 at 35.012 kb on - strand at 35.112 kb on + strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.166 kb on - strand at 35.352 kb on - strand, within ABID97_RS25575 at 35.354 kb on + strand, within ABID97_RS25575 at 35.474 kb on + strand, within ABID97_RS25575 at 35.474 kb on + strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.475 kb on - strand, within ABID97_RS25575 at 35.648 kb on + strand, within ABID97_RS25575 at 35.648 kb on + strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.649 kb on - strand, within ABID97_RS25575 at 35.654 kb on + strand, within ABID97_RS25575 at 35.655 kb on - strand, within ABID97_RS25575 at 35.655 kb on - strand, within ABID97_RS25575 at 35.825 kb on + strand, within ABID97_RS25575 at 35.825 kb on + strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575 at 35.826 kb on - strand, within ABID97_RS25575 at 36.427 kb on + strand, within ABID97_RS25580 at 36.709 kb on - strand at 36.939 kb on + strand, within ABID97_RS25585 at 36.939 kb on + strand, within ABID97_RS25585 at 36.939 kb on + strand, within ABID97_RS25585 at 36.939 kb on + strand, within ABID97_RS25585 at 37.021 kb on - strand, within ABID97_RS25585
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 34,271 - ABID97_RS25570 0.27 -1.1 34,307 - ABID97_RS25570 0.30 +0.1 34,312 + ABID97_RS25570 0.31 -0.1 34,831 + ABID97_RS25570 0.79 -0.7 34,832 - ABID97_RS25570 0.80 -0.3 34,853 - ABID97_RS25570 0.82 -0.1 34,922 - ABID97_RS25570 0.88 -0.2 34,924 + ABID97_RS25570 0.88 -0.3 34,924 + ABID97_RS25570 0.88 -1.1 34,925 - ABID97_RS25570 0.88 -0.2 35,012 - +0.9 35,112 + -0.1 35,166 - -0.4 35,166 - -0.1 35,166 - -0.4 35,166 - -0.8 35,166 - -0.7 35,352 - ABID97_RS25575 0.22 +1.8 35,354 + ABID97_RS25575 0.22 +0.8 35,474 + ABID97_RS25575 0.36 -0.2 35,474 + ABID97_RS25575 0.36 -0.7 35,475 - ABID97_RS25575 0.36 +0.2 35,475 - ABID97_RS25575 0.36 -0.3 35,475 - ABID97_RS25575 0.36 -1.1 35,648 + ABID97_RS25575 0.56 +0.2 35,648 + ABID97_RS25575 0.56 +0.1 35,649 - ABID97_RS25575 0.56 -0.7 35,649 - ABID97_RS25575 0.56 -0.2 35,649 - ABID97_RS25575 0.56 +0.0 35,649 - ABID97_RS25575 0.56 -0.1 35,654 + ABID97_RS25575 0.57 +0.6 35,655 - ABID97_RS25575 0.57 +0.3 35,655 - ABID97_RS25575 0.57 +0.3 35,825 + ABID97_RS25575 0.76 +0.3 35,825 + ABID97_RS25575 0.76 +0.3 35,826 - ABID97_RS25575 0.76 +0.0 35,826 - ABID97_RS25575 0.76 +0.5 35,826 - ABID97_RS25575 0.76 +1.3 36,427 + ABID97_RS25580 0.72 -0.7 36,709 - +0.2 36,939 + ABID97_RS25585 0.11 +0.2 36,939 + ABID97_RS25585 0.11 -0.1 36,939 + ABID97_RS25585 0.11 -0.4 36,939 + ABID97_RS25585 0.11 -0.3 37,021 - ABID97_RS25585 0.20 -0.1
Or see this region's nucleotide sequence