Strain Fitness in Variovorax sp. OAS795 around ABID97_RS23450

Experiment: NP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS23440 and ABID97_RS23445 are separated by 10 nucleotidesABID97_RS23445 and ABID97_RS23450 are separated by 76 nucleotidesABID97_RS23450 and ABID97_RS23455 are separated by 6 nucleotides ABID97_RS23440: ABID97_RS23440 - A24 family peptidase, at 4,847,960 to 4,848,925 _RS23440 ABID97_RS23445: ABID97_RS23445 - dephospho-CoA kinase, at 4,848,936 to 4,849,541 _RS23445 ABID97_RS23450: ABID97_RS23450 - MBOAT family protein, at 4,849,618 to 4,851,111 _RS23450 ABID97_RS23455: ABID97_RS23455 - hypothetical protein, at 4,851,118 to 4,852,134 _RS23455 Position (kb) 4849 4850 4851 4852Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4848.623 kb on + strand, within ABID97_RS23440at 4848.623 kb on + strand, within ABID97_RS23440at 4848.623 kb on + strand, within ABID97_RS23440at 4848.623 kb on + strand, within ABID97_RS23440at 4848.623 kb on + strand, within ABID97_RS23440at 4848.624 kb on - strand, within ABID97_RS23440at 4848.624 kb on - strand, within ABID97_RS23440at 4848.624 kb on - strand, within ABID97_RS23440at 4848.717 kb on - strand, within ABID97_RS23440at 4848.717 kb on - strand, within ABID97_RS23440at 4848.717 kb on - strand, within ABID97_RS23440at 4849.539 kb on + strandat 4849.744 kb on + strandat 4849.802 kb on - strand, within ABID97_RS23450at 4849.912 kb on + strand, within ABID97_RS23450at 4849.912 kb on + strand, within ABID97_RS23450at 4849.913 kb on - strand, within ABID97_RS23450at 4849.913 kb on - strand, within ABID97_RS23450at 4850.015 kb on - strand, within ABID97_RS23450at 4850.017 kb on - strand, within ABID97_RS23450at 4850.086 kb on + strand, within ABID97_RS23450at 4850.086 kb on + strand, within ABID97_RS23450at 4850.104 kb on + strand, within ABID97_RS23450at 4850.104 kb on + strand, within ABID97_RS23450at 4850.105 kb on - strand, within ABID97_RS23450at 4850.179 kb on + strand, within ABID97_RS23450at 4850.272 kb on + strand, within ABID97_RS23450at 4850.273 kb on - strand, within ABID97_RS23450at 4850.323 kb on + strand, within ABID97_RS23450at 4850.323 kb on + strand, within ABID97_RS23450at 4850.325 kb on + strand, within ABID97_RS23450at 4850.325 kb on + strand, within ABID97_RS23450at 4850.325 kb on + strand, within ABID97_RS23450at 4850.326 kb on - strand, within ABID97_RS23450at 4850.352 kb on + strand, within ABID97_RS23450at 4850.352 kb on + strand, within ABID97_RS23450at 4850.353 kb on - strand, within ABID97_RS23450at 4850.527 kb on + strand, within ABID97_RS23450at 4850.527 kb on + strand, within ABID97_RS23450at 4850.527 kb on + strand, within ABID97_RS23450at 4850.528 kb on - strand, within ABID97_RS23450at 4850.528 kb on - strand, within ABID97_RS23450at 4850.815 kb on + strand, within ABID97_RS23450at 4850.815 kb on + strand, within ABID97_RS23450at 4850.816 kb on - strand, within ABID97_RS23450at 4850.816 kb on - strand, within ABID97_RS23450at 4850.816 kb on - strand, within ABID97_RS23450at 4850.816 kb on - strand, within ABID97_RS23450at 4850.816 kb on - strand, within ABID97_RS23450at 4850.816 kb on - strand, within ABID97_RS23450at 4851.083 kb on - strandat 4851.097 kb on + strandat 4851.412 kb on + strand, within ABID97_RS23455at 4851.412 kb on + strand, within ABID97_RS23455at 4851.664 kb on + strand, within ABID97_RS23455at 4851.667 kb on + strand, within ABID97_RS23455at 4851.667 kb on + strand, within ABID97_RS23455at 4851.667 kb on + strand, within ABID97_RS23455at 4851.667 kb on + strand, within ABID97_RS23455at 4851.667 kb on + strand, within ABID97_RS23455at 4851.876 kb on + strand, within ABID97_RS23455at 4851.877 kb on - strand, within ABID97_RS23455at 4851.877 kb on - strand, within ABID97_RS23455at 4851.877 kb on - strand, within ABID97_RS23455at 4851.913 kb on + strand, within ABID97_RS23455at 4851.929 kb on - strand, within ABID97_RS23455at 4852.024 kb on + strand, within ABID97_RS23455

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Per-strain Table

Position Strand Gene LocusTag Fraction NP
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4,848,623 + ABID97_RS23440 0.69 -0.1
4,848,623 + ABID97_RS23440 0.69 -0.0
4,848,623 + ABID97_RS23440 0.69 +0.3
4,848,623 + ABID97_RS23440 0.69 -0.4
4,848,623 + ABID97_RS23440 0.69 +0.3
4,848,624 - ABID97_RS23440 0.69 +0.1
4,848,624 - ABID97_RS23440 0.69 -0.1
4,848,624 - ABID97_RS23440 0.69 +2.3
4,848,717 - ABID97_RS23440 0.78 +0.2
4,848,717 - ABID97_RS23440 0.78 +0.1
4,848,717 - ABID97_RS23440 0.78 -0.4
4,849,539 + +0.2
4,849,744 + -2.2
4,849,802 - ABID97_RS23450 0.12 -2.2
4,849,912 + ABID97_RS23450 0.20 -3.9
4,849,912 + ABID97_RS23450 0.20 -3.9
4,849,913 - ABID97_RS23450 0.20 -3.8
4,849,913 - ABID97_RS23450 0.20 -2.7
4,850,015 - ABID97_RS23450 0.27 -3.5
4,850,017 - ABID97_RS23450 0.27 -0.8
4,850,086 + ABID97_RS23450 0.31 -2.8
4,850,086 + ABID97_RS23450 0.31 -2.7
4,850,104 + ABID97_RS23450 0.33 -2.1
4,850,104 + ABID97_RS23450 0.33 -1.6
4,850,105 - ABID97_RS23450 0.33 -1.6
4,850,179 + ABID97_RS23450 0.38 -2.2
4,850,272 + ABID97_RS23450 0.44 -2.9
4,850,273 - ABID97_RS23450 0.44 -2.7
4,850,323 + ABID97_RS23450 0.47 -3.3
4,850,323 + ABID97_RS23450 0.47 -4.4
4,850,325 + ABID97_RS23450 0.47 -0.9
4,850,325 + ABID97_RS23450 0.47 -2.7
4,850,325 + ABID97_RS23450 0.47 -2.1
4,850,326 - ABID97_RS23450 0.47 -0.1
4,850,352 + ABID97_RS23450 0.49 -2.8
4,850,352 + ABID97_RS23450 0.49 -1.8
4,850,353 - ABID97_RS23450 0.49 -2.1
4,850,527 + ABID97_RS23450 0.61 -3.2
4,850,527 + ABID97_RS23450 0.61 -2.7
4,850,527 + ABID97_RS23450 0.61 -2.3
4,850,528 - ABID97_RS23450 0.61 -3.2
4,850,528 - ABID97_RS23450 0.61 -3.4
4,850,815 + ABID97_RS23450 0.80 -4.6
4,850,815 + ABID97_RS23450 0.80 -3.2
4,850,816 - ABID97_RS23450 0.80 -3.1
4,850,816 - ABID97_RS23450 0.80 -2.7
4,850,816 - ABID97_RS23450 0.80 -3.5
4,850,816 - ABID97_RS23450 0.80 -1.1
4,850,816 - ABID97_RS23450 0.80 -1.7
4,850,816 - ABID97_RS23450 0.80 -2.3
4,851,083 - -2.5
4,851,097 + -1.9
4,851,412 + ABID97_RS23455 0.29 -2.8
4,851,412 + ABID97_RS23455 0.29 -2.9
4,851,664 + ABID97_RS23455 0.54 -3.9
4,851,667 + ABID97_RS23455 0.54 -2.8
4,851,667 + ABID97_RS23455 0.54 -3.6
4,851,667 + ABID97_RS23455 0.54 -2.2
4,851,667 + ABID97_RS23455 0.54 -2.3
4,851,667 + ABID97_RS23455 0.54 -1.4
4,851,876 + ABID97_RS23455 0.75 -3.6
4,851,877 - ABID97_RS23455 0.75 -2.1
4,851,877 - ABID97_RS23455 0.75 -2.7
4,851,877 - ABID97_RS23455 0.75 -1.5
4,851,913 + ABID97_RS23455 0.78 -2.7
4,851,929 - ABID97_RS23455 0.80 -3.5
4,852,024 + ABID97_RS23455 0.89 -3.7

Or see this region's nucleotide sequence