Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22620
Experiment: NP
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | NP |
---|---|---|---|---|---|
remove | |||||
4,683,863 | - | +0.5 | |||
4,683,923 | + | +0.1 | |||
4,683,923 | + | +1.1 | |||
4,683,923 | + | +0.7 | |||
4,683,924 | - | -0.2 | |||
4,683,924 | - | +1.4 | |||
4,683,997 | + | ABID97_RS22620 | 0.14 | +1.3 | |
4,683,998 | - | ABID97_RS22620 | 0.14 | +0.4 | |
4,683,998 | - | ABID97_RS22620 | 0.14 | +0.7 | |
4,684,131 | - | ABID97_RS22620 | 0.36 | +0.9 | |
4,684,155 | - | ABID97_RS22620 | 0.40 | +1.8 | |
4,684,214 | + | ABID97_RS22620 | 0.50 | +0.9 | |
4,684,215 | - | ABID97_RS22620 | 0.50 | +1.9 | |
4,684,215 | - | ABID97_RS22620 | 0.50 | +0.4 | |
4,684,482 | - | +1.5 | |||
4,684,514 | + | -0.1 | |||
4,684,515 | - | +1.7 | |||
4,684,633 | + | +0.8 | |||
4,684,882 | + | ABID97_RS22625 | 0.14 | +1.1 | |
4,684,882 | + | ABID97_RS22625 | 0.14 | +1.3 | |
4,684,882 | + | ABID97_RS22625 | 0.14 | +1.3 | |
4,684,882 | + | ABID97_RS22625 | 0.14 | +1.3 | |
4,684,883 | - | ABID97_RS22625 | 0.14 | +1.2 | |
4,684,883 | - | ABID97_RS22625 | 0.14 | +1.1 | |
4,685,005 | + | ABID97_RS22625 | 0.22 | +1.1 | |
4,685,129 | - | ABID97_RS22625 | 0.31 | +1.4 |
Or see this region's nucleotide sequence